raphaelmourad Goto Github PK

abyss-activity

ABySS learning activity

basenji

Sequential regulatory activity predictions with deep convolutional neural networks.

bpnet

Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them

deep-learning-for-genomics-training

Phase 2 repo for the Inserm Workshop on Machine Learning in Biology

deepg4

DeepG4: A deep learning approach to predict active G-quadruplexes

deepg4toolscomparison

DeepG4ToolsComparison: A snakemake pipeline to run and evaluate G4’s DNA prediction tools

deepgnn

Semi-supervised deep learning with graph neural network for cross-species regulatory sequence prediction

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

hicblock

TAD-free analysis of architectural proteins and insulators

hicfeat

Computational Identification of Genomic Features that Influence 3D Chromatin Domain Formation

hicglmi

Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach

kmer

A Python code for generating k-mer features for a set of DNA/ genomic sequences.

latex-template-collection

Collection of different LaTeX/XeTeX templates (cv, invoices, timesheets, letters, etc.).

mistral-chem

Large language model for chemistry

mistral-dna

Large language model Mistral for DNA

phyloctcflooping

Studying 3D genome evolution using genomic sequence

preddsb

Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution

sonnet

TensorFlow-based neural network library

spektral

Graph Neural Networks with Keras and Tensorflow 2.

tadreg

TADreg : A versatile regression framework for TAD identification, differential analysis and prediction

tasi.ai