Rasmus Olofzon's Projects
My solutions to this year's Advent of Code https://adventofcode.com/2020
Advent of Code 2022
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
Accompanying code for: Single-cell multiomics of human fetal hematopoiesis defines a developmental specific population and a fetal signature
Template to generate analysis project structure for bioinformaticians in the Charlotta Böijers lab at Lund University.
Accompanying code for analysis of manuscript in Nature Aging: Implications of stress-induced gene expression for hematopoietic stem cell aging studies
Multiome (RNA+ATAC from same cell) data generated by Qinyu Zhang in David Bryder's lab. Paper here: https://doi.org/10.7554/eLife.91826.2
Ready-to-run Docker images containing Jupyter applications
my dotfiles
fullPage plugin by Alvaro Trigo. Create full screen pages fast and simple
Ananke: A theme for Hugo Sites
Hallo is a single-page Hugo theme to introduce yourself.
A collection of scripts that are useful to me
My first Android app. It's done as a part of an assignment of a course at LTH, namely [MAMN01]
Python library to perform memory efficient cross-sample cell mapping using single cell transciptomics (scRNA-Seq) data
XL
GitHub Action for use with python package interrogate
an attempt at implementing the spyfall game
Github Pages (new version)
A repo for rosalind.info problems
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, ATAC-Seq and CITE data. Analyze atlas scale datasets with millions of cells on laptop.
A Shiny webapp for creating a Seurat object without programming expertise. Load a count matrix directory, interactively filter on metadata, view results, download Seurat object and results of differential gene expression testing.
hack the crisis