Comments (3)
there are two parts as to why this likely is not working:
- #2718 is problematic in so far as the index file is inaccessible to anything
- igv appears to need an indexURL parameter for indexed files needed for certain visualizations in igv-js (https://github.com/igvteam/igv.js/wiki/Tracks-2.0)
i am investigating/working on both
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testing has completed and have confirmed this to be working - once #3471 and #3475 are resolved i will make the pull request against this and #2718 (as well as a pull request in the https://github.com/refinery-platform/docker_igv_js repo to handle the extra file). i was unable to reproduce the issue seen in the log, and am unsure if it is even a problem (although when talking to geoff/using the viz, it didn't actually affect the launch of the visualization).
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See also #2713
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