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adv-r

Advanced R programming: a book

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-deep-learning

A curated list of awesome Deep Learning tutorials, projects and communities.

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

awesome-go

A curated list of awesome Go frameworks, libraries and software

awesome-machine-learning-cn

机器学习资源大全中文版，包括机器学习领域的框架、库以及软件

awesome-math

A curated list of awesome mathematics resources

awesome-network-analysis

A curated list of awesome network analysis resources.

awesome-php

A curated list of amazingly awesome PHP libraries, resources and shiny things.

awesome-python

A curated list of awesome Python frameworks, libraries and software

awesome-r

A curated list of awesome R packages, frameworks and software.

awesomegenomics

Cancer Data Science's go to place for excellent genomics tools and packages

azureml-regression-example

This repo contains all the code and data necessary to explore non-linear regression using Azure ML.

ballgown

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

beast2

Bayesian Evolutionary Analysis by Sampling Trees

bedtools2

A powerful toolset for genome arithmetic.

bio.jl

Bioinformatics and Computational Biology Infrastructure for Julia

bioinformatics

bioinformatics-training

Bioinformatics training resources

biopython

Official git repository for Biopython (converted from CVS)

cellchat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

chemminer

Cheminformatics Toolkit for R

conda

OS-agnostic, system-level binary package manager and ecosystem

consensusclusterplus

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ConsensusClusterPlus.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ConsensusClusterPlus.

creating-maps-in-r

Introductory tutorial on graphical display of geographical information in R.

cufflinks

cytoscape

Cytoscape: an open source platform for network analysis and visualization

darch

Create deep architectures in the R programming language

datadr

Divide and Recombine

deseq2

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DESeq2.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DESeq2.