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cobrame-docker

Docker image for a full ME model stack.

corda

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

covid-19_scrnaseq

difequations-macrophage

docker_mini_training

Material for the Docker mini training at INMEGEN.

dycone

Analyze enzyme regulation with metabolome data.

m1-m2-macrophage-polarization

mb-phenix

mbtools

R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.

mext2d

Analysis scripts and materials for the MEXT2D project.

mext2d_networks

This repository contains all the code to implement all examples showed in our paper: The gut microbiota and the progression of preT2D to T2D are linked to keystone taxa in Mexican cohort study: A multidimensional perspective on microbial ecology

micom

Python package to study microbial communities using metabolic modeling.

micom_study

Additional materials for the micom manuscript.

microbiome

The standardized analysis pipeline used for analyzing 16S and metagenome data.

microbiome_two_treatments_metformine-linagliptine

post_covid_metabolome_machinelearning

Notebooks to reproduce the results of our work "Exploring Metabolic Anomalies in COVID-19 and Post-COVID-19: A Machine Learning Approach with Explainable Artificial Intelligence"

proliferation

Project to study proliferation and metabolic liabilities across several thousand cancer samples.

rater

A flask app to rate and review participants of a conference.

resendislab.github.io

The (rendered) website of the Resendis lab. Do not send PRs here! Use https://github.com/resendislab/website instead!

sc-phenix

scfba

scpipeline

targeting-glycolysis-metabolism-datamodels

website

Our group website files for Hugo. Send PRs for updates here.