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amborella_enm

This repository contains scripts for processing and analyzing data associated with "Linking genome signatures of selection and adaptation in the non-model angiosperm Amborella" published in Current Opinion in Plant Biology, 2018 (https://doi.org/10.1016/j.pbi.2018.04.003)

botany2021_dlworkshop

botany2022_dlworkshop

botany2023_dlworkshop

This is the hub for the Botany 2023 workshop "Using deep learning with digitized herbarium specimen image data""

carex_hybridization

caribbean_mangroves

This repository contains scripts associated with manuscript https://doi.org/10.1111/mec.14894

cherry_machine_learning

machine learning analyses of morphological variation in the cherry genus

coastal_enm

Scripts for "Hindcast-validated species distribution models reveal future vulnerabilities of mangroves and salt marsh species"

dataset_cards

genome_skimming_workshop_lab_2024

igcb_biological_images

intro-rmarkdown

ipyrad

Interactive assembly and analysis of RAD-seq data sets

machine_learning_prunus_herbarium_sheets

This repo holds jupyter notebooks and scripts associated with the manuscript "A phylogenomic approach, combined with morphological characters gleaned via machine learning, uncovers the hybrid origin and biogeographic diversification of the plum genus""

microsats_repeatfilter

parallelnewhybrid

recipes

A collection of my cooking recipes

recipes-1

This is for Carpentries

red_mangrove_rad_ssr

This repository contains scripts that analyze data and generate figures for a manuscript published in December 2017: Adding loci improves phylogeographic resolution in red mangroves despite increased missing data: comparing microsatellites and RAD-Seq and investigating loci filtering; DOI:10.1038/s41598-017-16810-7

shiny-examples

transcriptome_microsats

un-report