rickgelhausen Goto Github PK

2018_bacterial_pipeline_riboseq

Ribosome profiling pipeline for bacterial samples created by Fuad Mohammad.

bioconda-recipes

Conda recipes for the bioconda channel.

deepribo

deepribo_image

singularity image for deepribo

figure-dump

hribo

We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, and integrates them with additional computed features. This facilitates both the rapid discovery of ORFs and their prioritization for functional characterization.

hribo_readthedocs

ReadTheDocs documentation for HRIBO

intarna

Efficient target prediction incorporating accessibility of interaction sites

intarna-benchmark

Data and scripts to benchmark IntaRNA

irsom_image

pagestesting

pathsnake

A tool to perform functional enrichment analysis

reparation_blast

riboreport

sphinx-test

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

startstopfinder

streamlit-testing

testrmd

testing rmd

translational_regulation

Detection of differential translated genes using Ribo-seq

uorf-tools_readthedocs

websperiments

webtests