Comments (1)
Thanks for your interests.
Not sure if I understood your question correctly. Do you mean to rasterize the vtk / swc result lines in a 3D numpy array? so that the centerline voxels are 1 and the rest are 0. This is not included in rivuletpy since the expected output here are lines defined in world coordinates (mm) in vtk and image coordinates in swc. However you could check out the make_vol
function in https://github.com/RivuletStudio/Tuby/blob/master/tuby.py
to get the idea of how to rasterize the 3D curves into a 3D voxel volume.
Pls let me know if I made sense.
from rivuletpy.
Related Issues (18)
- Implement MSFM
- Missing module simpleitk Suggestion: edit instalation instructions HOT 2
- swc.shape and soma.save, soma.pad don't exist HOT 8
- scikit-image<0.14.2 will raise an ImportError with numpy HOT 1
- Setup incompatible with pip3 HOT 2
- Installation documentation error HOT 1
- soma object has no attribute 'pad' HOT 7
- Cannot read .swc file result in NeuroM HOT 2
- Example usage
- Failed to find TIFF header file
- Add V3DRAW support for IO
- ModuleNotFoundError: No module named 'msfm' HOT 1
- Implement new performance metric
- See if dt can be reused from soma detection
- msfm segmentation fault sometimes for Bigneuron first2000 images
- Failed to find TIFF library HOT 16
- setup.py not compatible with pip>10.0.0
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from rivuletpy.