Issue with Traceplots inside of Map2stan

[rmcelreath]

Issue with Traceplots inside of Map2stan

[rmcelreath]

These bugs remain mysterious, as no one has yet found out how to get a new system to produce them.

The underlying function in this case is tracerplot. You should be able to call it directly.

[lptickman]

Thanks a bunch, using the underlying function worked.

On Tue, Oct 18, 2016 at 3:19 AM, Richard McElreath <[email protected]

wrote:

These bugs remain mysterious, as no one has yet found out how to get a new
system to produce them.

The underlying function in this case is tracerplot. You should be able to
call it directly.

—
You are receiving this because you authored the thread.
Reply to this email directly, view it on GitHub
#60 (comment),
or mute the thread
https://github.com/notifications/unsubscribe-auth/AV133-zSaap673PKzon72R2xn_Tf3RwTks5q1IEbgaJpZM4KZWQB
.

[KaiserDominici]

I've encountered the same problem. I think there is an issue with the method definition, there is no plot.map2stan and therefore this class inherits from the default, which maybe does not support S4?

> loadedNamespaces()
 [1] "Rcpp"        "matrixStats" "mvtnorm"     "lattice"     "grDevices"  
 [6] "digest"      "MASS"        "plyr"        "grid"        "gtable"     
[11] "rethinking"  "stats4"      "datasets"    "StanHeaders" "coda"       
[16] "scales"      "ggplot2"     "rlang"       "utils"       "lazyeval"   
[21] "graphics"    "labeling"    "base"        "tools"       "loo"        
[26] "munsell"     "parallel"    "rstan"       "compiler"    "stats"      
[31] "inline"      "colorspace"  "tibble"      "methods"     "gridExtra"  

> methods(plot)
 [1] plot,ANY,ANY-method             plot,color,ANY-method          
 [3] plot,profile.mle,missing-method plot,stanfit,missing-method    
 [5] plot.acf*                       plot.correspondence*           
 [7] plot.data.frame*                plot.decomposed.ts*            
 [9] plot.default                    plot.dendrogram*               
[11] plot.density*                   plot.ecdf                      
[13] plot.factor*                    plot.formula*                  
[15] plot.function                   plot.ggplot*                   
[17] plot.gtable*                    plot.hclust*                   
[19] plot.histogram*                 plot.HoltWinters*              
[21] plot.isoreg*                    plot.lda*                      
[23] plot.lm*                        plot.loo*                      
[25] plot.mca*                       plot.mcmc*                     
[27] plot.mcmc.list*                 plot.medpolish*                
[29] plot.mlm*                       plot.ppr*                      
[31] plot.prcomp*                    plot.princomp*                 
[33] plot.profile*                   plot.profile.nls*              
[35] plot.raster*                    plot.ridgelm*                  
[37] plot.shingle*                   plot.spec*                     
[39] plot.stepfun                    plot.stl*                      
[41] plot.table*                     plot.trellis*                  
[43] plot.ts                         plot.tskernel*                 
[45] plot.TukeyHSD*                 

> showMethods("plot")
Function: plot (package graphics)
x="ANY", y="ANY"
x="color", y="ANY"
x="map2stan", y="missing"
    (inherited from: x="ANY", y="ANY")
x="profile.mle", y="missing"
x="stanfit", y="missing"

> selectMethod(plot, "map2stan")
Method Definition (Class "derivedDefaultMethod"):

function (x, y, ...) 
UseMethod("plot")
<bytecode: 0x00000000151ef860>
<environment: namespace:graphics>

Signatures:
        x          y    
target  "map2stan" "ANY"
defined "ANY"      "ANY"

> getMethod(plot, "map2stan")
Error in getMethod(plot, "map2stan") : 
  no method found for function 'plot' and signature map2stan

[qqqilihq]

Hi, I get an error code with traceplot() as well. not sure if it is related:

Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function ‘traceplot’ for signature ‘"mcmc"’

I tried to plot an MCMCregress model.