citing use of package

[rmldj]

citing use of package

[rmldj]

Thanks! I am really glad that it's useful.
Please cite the github URL of the package.
Btw. I would be happy if at some stage you could e-mail me your paper..

[amsinha9]

Yes, once it has been accepted, we will share the paper. Do you know if there is a way to generate half of the 3D brain image to plot the subcortical parcels? We are trying to edit the source code in hcp_utils.py to only show the left hemisphere and the corresponding left parcels. We are wondering if we could edit the function load_surfaces and do something similar to below:

for hemisphere, hemisphere_name in [('L', 'left')]:
     elif count==1:
                #meshes[variant] = meshes[variant+'_left']

[rmldj]

You mean subcortical? Then there is no way using hcp_utils as it uses nilearn's surface plot which plots only cortical surfaces (as I discussed in the other issue).

I now remember that once I made some 3d plot with subcortical structures using matplotlib 3d but that was rather ugly and slow. I do not know if I can locate the script...