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ISCB DC Area Regional Student Group - Summer 2016 Workshop
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
ATAC-seq and DNase-seq processing pipeline
ATAC-seq lab for BIOINF545
Docker container for Cell Ranger
R scripts to identify differential regions in bigwig datasets of ChIP-seq, ATAC-seq, etc.
Test for Making Docker File
ez Zhu's miscellaneous R functions
Full-Length Alternative Isoform analysis of RNA
Shiny app for exploring a PCA
Notebook and examples related to La Manno and Gyllborg et al. 2016
Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
Kallisto Docker
A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
R-Toolbox for Nanopore Pipeline: Automated Analysis of cDNA Sequencing Data
Analysis Framework for Biological Data from High Throughput Experiments
Useful bash one-liners for bioinformatics.
This tutorial demonstrates how the Pinfish software can be used with Nanopore cDNA sequence data to discover gene isoforms
A tool for the visualization and analysis of longitudinal behavioral data
PICI single cell RNA-seq container
Simple Python version management
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
Multiplex single-cell ATAC-seq analysis pipeline (Ren Lab under development)
R package for analyzing single-cell RNA-seq data
Preprocessing of single-cell RNA-Seq data for input to kallisto
Analysis of single cell RNA-seq data course, Cambridge University, UK
Single-cell Interpretation via Multi-kernel Learning (R code in master branch, Matlab code in matlab branch), implementations of the method published in http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.4207.html.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.