Comments (4)
Hi @Ahmedalaraby20, sorry about the delayed response. I haven't been able to reproduce your issue, can you send me the meta.data from your object?
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Hey,
Please find attached the metadata RDS
meta.zip
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Really sorry about the delayed response, using your object I still haven't been able to reproduce the issue, here is the code I tried, and I attached a screenshot from Inkscape. It might be good to try re-installing djvdj from github and then re-running. Is the code/data you sent the exact same code/data.frame used to generate your previous plot?
div_fns <- c(
simpson = abdiv::simpson,
shannon = abdiv::shannon,
pielou = abdiv::pielou_e
)
obj <- readRDS("~/Projects/djvdj/data-old/ahmed/2024-02-26_meta/meta.rds")
set.seed(42)
obj |>
plot_diversity(
data_col = "cdr3",
cluster_col = "subset",
chain = "TRA",
downsample = TRUE,
method = div_fns,
alpha = 0.5,
linetype = 2,
color = "black"
) +
theme(
strip.text = element_text(face = "bold"),
axis.text.x = element_text(size = 10, angle = 90, hjust = 1)
)
ggsave("issue_141_plot.svg", width = 10, height = 7.5, units = "cm")
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@sheridar Thanks a lot
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