Comments (2)
cuehs
commented on June 19, 2024
1
PROCESSING_DATE is an internal field, I am not sure why it is in the public repository. regardless: RECEIVE_DATE and PROCESSING_DATE both indicate when the sequence was uploaded to the RKI and when it was processed at RKI (usually that's the same day)
I just saw the twitter conversation:
DATE_DRAW can be used as a proxy of when an infection occurred.
PRIMEDIAGNOSTIC_LAB_PC can be used as a proxy for the location of the infection.
Unfortunately the number of sequences becomes only really informative after 10 days or so (the average delay between the date the "schnelltest" sample is taken and the pcr result is uploaded to us).
from sars-cov-2-sequenzdaten_aus_deutschland.
cuehs
commented on June 19, 2024
fixed by #12
from sars-cov-2-sequenzdaten_aus_deutschland.
Related Issues (20)
- Derzeit keine Entwicklungslinien
- Fehlende Sequenzdaten (csv/fasta) Uploads ab 2022-09-19 HOT 3
- Potentially misdated sequences from Berlin uploaded to GISAID by RKI today HOT 1
- Fehlende Sequenz-/Metadaten (csv/fasta) Uploads ab 2022-09-27 HOT 4
- Using nextclade for pango lineage classification HOT 3
- Pipeline scheint wieder zu hängen HOT 1
- Trouble importing zipped csv into R HOT 3
- SARS-CoV-2-Sequenzdaten_Deutschland.fasta.xz - CRC-Fehler / Defektes Archiv HOT 4
- What does the "." denote in the FASTA files?
- Update 2022-12-14/15 für SARS-CoV-2-Sequenzdaten_Deutschland.csv/fasta.xz ausgefallen
- Keine Updates für SARS-CoV-2-Sequenzdaten_Deutschland csv/fasta seit 2022-12-31 HOT 1
- Sudden increase in artefactual mutations in sequences from Germany HOT 1
- Pipeline Probleme oder keine neue Daten mehr? HOT 1
- Update on the reporting of SARS-CoV-2 variants after the expiration of the Coronavirus Surveillance Regulation HOT 3
- Submission date lost for many sequences: SEQUENCE.PUSHED_TO_DWH empty for 1.099m out of 1.228m rows HOT 3
- README contains unclear explanation for meaning of SEQUENCING_REASON field HOT 1
- Update 2023-09-25?
- 2023-10-09? HOT 1
- IMS-10285-CVDP-18B5CDB7-673D-47A6-984F-0BF3CF7F7DDF HOT 2
- (Auto-)Updates of Metadata Files Missing (zenodo.json, govdata.ttl, nfdi4health.json) HOT 1
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