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20231211_ticket_4242

acnfp-trans-counter

A very quick and dirty project to help out a colleague

afra

Genome Annotation for the Masses

airrflow

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

aletheia-app

Alethia peer to peer publishing platform

alphafold-nf

anchor

Anchor is a 16S rRNA gene amplicon pipeline for microbial analysis of multiple environmental samples.

ansible-playbooks

A collection of playbooks used for managing machines

apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

asciinema-player

Web player for terminal session recordings ⏩

atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

babble

A hashgraph implementation written in Go

bioinformatics-ca.github.io

not used anymore

bioinformaticsdotca.github.io

Repo for student website

bioruby-chado

A library that allows you to pull ruby objects out of a Chado-schema database

bioruby-lazyblastxml

A plugin that allows you to parse large blast XML output files lazily, reading only what you need.

bioruby-mummer

Help for working with the output of the .delta files produced by nucmer and promer

branch-testing

breakerbreaker

brohrer.github.io

Public web page for brohrer

busco

https://gitlab.com/ezlab/busco

cbw_htseq_module2

Module 2 materials for Informatics on High Throughput Sequencing Data

cbw_htseq_module5

CBW HT-seq workshop module 5 on SV variants calling

cegma-docker

Docker container for running CEGMA

comet

MS/MS search engine.

comparative-sketch

A very quick and dirty sketch to quickly visualise large-scale genome comparisons in non-model organisms. Also might be handy for creating SVG drafts which can be cleaned up in Inkscape for publication.

cosmo

COSMO: COrrection of Sample Mislabeling by Omics

devcontainers.github.io

Web content for the development containers specification.

dna

DNAseq pipelines