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alphapept

A modular, python-based framework for mass spectrometry. Powered by nbdev.

candle_lib

casanovo

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

catools

:exclamation: This is a read-only mirror of the CRAN R package repository. caTools — Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc

datascience

Data Science Group at Mayo Clinic's github experiments

dgsdrp

The source code of paper "deep graph and sequence representation learning for drug response prediction"

genomicwarehouse

This is an open source project that attempts to answer important genomics questions on the big data platform

hipt

Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

homl

Hands-On Machine Learning Presentations

lessdrf

llm-workshop

mcc-dnabert

Install script to run DNABERT on Mayo Clinic Cloud infrastructure

mgfrcpp

Simple but fast minimal mgf parser made in Rcpp

microsoft365r

R SDK for interacting with Microsoft 365 APIs

mprcextractraw

Extracts information from Thermo's .RAW files and produces multiple reports from it

msmseval

msmsEval from http://physchem.ox.ac.uk/~jwong/msmseval/

myrimatch

Instrumented version of Myrimatch + ProteoWizard for the 'tracer bullets' poster

opensift

Open-Source SIFT Library

opentims

Open-source C++ and Python module for opening binary timsTOF data files.

quarto-cli

Open-source scientific and technical publishing system built on Pandoc.

r-pkgs

Building R packages

rann2

Fast Nearest Neighbour Search (Rcpp wrapper for libANN)

rawtools

RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.

restorepoint

Debugging in R with restore points

runit

Source code for the RUnit R package

singularity

Singularity definitions that can be extended to support execution of community models.

spring-security-adfs-saml2

Spring Security module to authenticate against ADFS using SAML2 protocol

swift-bin

Large binaries associated with Swift. Separated to make development of the source code easier.

tfjs-tsne

webgl

WebGL demos for a presentation