installing MODIStsp

[ropensci]

installing MODIStsp

[mnosshi]

After manually installing the dependencies using install.packages(c("bitops", "data.table", "gdalUtils", "gWidgets", "hash", "plyr", "raster", "RCurl", "rgdal", "rgeos", "xts", "XML", "xml2", "sp", "stringr", "httr", "RJSONIO","chron","iterators", "digest","pacman"))

I am still not able to install MODIStsp
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called ‘RGtk2’
In addition: Warning message:
package ‘MODIStsp’ was built under R version 3.2.5
Error: package or namespace load failed for ‘MODIStsp’

Thanks,
MN

[lbusett]

Hi,

could you please tell us which version of "R" you are using ?

In the meantime, for starters, could you please try updating all your packaes:

update.packages()

then, install the development version of devtools:

install.packages(c("devtools"))
devtools::install_github("hadley/devtools")
library(devtools)

, install gWidgetsRGtk2:

install.packages("gWidgetsRGtk2")
library(gWidgetsRGtk2)

Upon loading the package, an error window will probably appear. Don't worry! This is just signaling that libatk-1.0-0.dll is missing from your system. This is due to the fact that library "GTK+" is not yet installed on your system and needs to be installed. To do so, press "OK". A new window dialog window will appear, asking if you want to install "GTK+". Select "Install GTK" and then "OK" . Windows will download and install the GTK+ library. When it finishes, the RSession will be restarted and you should be ready to go!1

In case RStudio doesn't automatically restart after installing GTK+ or continuously asks to install GTK+ again, kill it form "Task Manager" (or restart the R session from RStudio "Session" menu), reload RStudio and the try to reload gWidgetsRGtk2. If it loads correctly, you should be ready to go: you should be able to install MODIStsp via:

library(devtools)
install_github("lbusett/MODIStsp", ref = "master")

If it still fails, try downloading the GTK+ bundle from:

http://ftp.gnome.org/pub/gnome/binaries/win64/gtk+/2.22/gtk+-bundle_2.22.1-20101229_win64.zip (OR http://ftp.gnome.org/pub/gnome/binaries/win32/gtk+/2.22/gtk+-bundle_2.22.1-20101227_win32.zip if on Win32)

, unzip the archive on a folder of your choice (e.g., C:\Program Files\GTK+), then add the path to the "bin" subfolder (e.g., C:\Program Files\GTK+\bin\ to your system PATH environment variable.

Restart your system and try loading again gWidgetsRGtk2. If it loads properly, you should be able to install MODIStsp via:

library(devtools)
install_github("lbusett/MODIStsp", ref = "master")

HTH.

Lorenzo

[mnosshi]

I am using R version 3.2.2 Thank you for your response and suggestions, I will go ahead and update packages and see what happens. In the interest of time I am currently going to use Earthdata Search and convert hdd files to jiff. Nonetheless I am still interested in being able to all this and the image processing in R, so I appreciate your help. Best, Maged

…

On Sun, Jul 9, 2017 at 12:32 PM, Lorenzo Busetto ***@***.***> wrote: Hi, could you please tell us which version of "R" you are using ? In the meantime, for starters, could you please try updating all your packaes: update.packages() then, install the development version of devtools: install.packages(c("devtools")) devtools::install_github("hadley/devtools") library(devtools) , install gWidgetsRGtk2: install.packages("gWidgetsRGtk2") library(gWidgetsRGtk2) Upon loading the package, an error window will probably appear. Don't worry! This is just signaling that libatk-1.0-0.dll is missing from your system. This is due to the fact that library "GTK+" is not yet installed on your system and needs to be installed. To do so, press "OK". A new window dialog window will appear, asking if you want to install "GTK+". Select "Install GTK" and then "OK" . Windows will download and install the GTK+ library. When it finishes, the RSession will be restarted and you should be ready to go!1 In case RStudio doesn't automatically restart after installing GTK+ or continuously asks to install GTK+ again, kill it form "Task Manager" (or restart the R session from RStudio "Session" menu), reload RStudio and the try to reload gWidgetsRGtk2. If it loads correctly, you should be ready to go: you should be able to install MODIStsp via: library(devtools) install_github("lbusett/MODIStsp", ref = "master") If it still fails, try downloading the GTK+ bundle from: http://ftp.gnome.org/pub/gnome/binaries/win64/gtk+/2. 22/gtk+-bundle_2.22.1-20101229_win64.zip (OR http://ftp.gnome.org/pub/ gnome/binaries/win32/gtk+/2.22/gtk+-bundle_2.22.1-20101227_win32.zip if on Win32) , unzip the archive on a folder of your choice (e.g., C:\Program Files\GTK+), then add the path to the "bin" subfolder (e.g., C:\Program Files\GTK+\bin\ to your system PATH environment variable. Restart your system and try loading again gWidgetsRGtk2. If it loads properly, you should be able to install MODIStsp via: library(devtools) install_github("lbusett/MODIStsp", ref = "master") HTH. Lorenzo — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Acl6rZuEIvIbnAaNID-irv77RUh_se4Pks5sMQ6zgaJpZM4ORAuV> .

[mnosshi]

Hi, After I load devtools I get the following warning: package ‘devtools’ was built under R version 3.2.5 Does this mean anything? Then I installed gWidgetsRGtk2 and there is no prompt to click "OK", instead: dependency ‘RGtk2’ is not available * The downloaded binary packages are in* * /var/folders/dd/dczsr34x44z7t5g9pylx0skh0000gn/T//RtmpCX2yVw/downloaded_packages* So then I downloaded the GKT+ file onto my mac but not sure how to set the system PATH environment variable? is this a line of code in R, or do I figure this out in Terminal? Thanks, Maged

…

On Tue, Jul 11, 2017 at 12:29 PM, Maged Nosshi ***@***.***> wrote: I am using R version 3.2.2 Thank you for your response and suggestions, I will go ahead and update packages and see what happens. In the interest of time I am currently going to use Earthdata Search and convert hdd files to jiff. Nonetheless I am still interested in being able to all this and the image processing in R, so I appreciate your help. Best, Maged On Sun, Jul 9, 2017 at 12:32 PM, Lorenzo Busetto ***@***.*** > wrote: > Hi, > > could you please tell us which version of "R" you are using ? > > In the meantime, for starters, could you please try updating all your > packaes: > > update.packages() > > then, install the development version of devtools: > > install.packages(c("devtools")) > devtools::install_github("hadley/devtools") > library(devtools) > > , install gWidgetsRGtk2: > > install.packages("gWidgetsRGtk2") > library(gWidgetsRGtk2) > > Upon loading the package, an error window will probably appear. Don't > worry! This is just signaling that libatk-1.0-0.dll is missing from your > system. This is due to the fact that library "GTK+" is not yet installed on > your system and needs to be installed. To do so, press "OK". A new window > dialog window will appear, asking if you want to install "GTK+". Select > "Install GTK" and then "OK" . Windows will download and install the GTK+ > library. When it finishes, the RSession will be restarted and you should be > ready to go!1 > > In case RStudio doesn't automatically restart after installing GTK+ or > continuously asks to install GTK+ again, kill it form "Task Manager" (or > restart the R session from RStudio "Session" menu), reload RStudio and the > try to reload gWidgetsRGtk2. If it loads correctly, you should be ready to > go: you should be able to install MODIStsp via: > > library(devtools) > install_github("lbusett/MODIStsp", ref = "master") > > If it still fails, try downloading the GTK+ bundle from: > > http://ftp.gnome.org/pub/gnome/binaries/win64/gtk+/2.22/gtk+ > -bundle_2.22.1-20101229_win64.zip (OR http://ftp.gnome.org/pub/gnome > /binaries/win32/gtk+/2.22/gtk+-bundle_2.22.1-20101227_win32.zip if on > Win32) > > , unzip the archive on a folder of your choice (e.g., C:\Program > Files\GTK+), then add the path to the "bin" subfolder (e.g., C:\Program > Files\GTK+\bin\ to your system PATH environment variable. > > Restart your system and try loading again gWidgetsRGtk2. If it loads > properly, you should be able to install MODIStsp via: > > library(devtools) > install_github("lbusett/MODIStsp", ref = "master") > > HTH. > > Lorenzo > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#82 (comment)>, > or mute the thread > <https://github.com/notifications/unsubscribe-auth/Acl6rZuEIvIbnAaNID-irv77RUh_se4Pks5sMQ6zgaJpZM4ORAuV> > . >

[lbusett]

First of all, I'd suggest you to also update your "R" version to the latest available.

Then, you could try to install RGtk2 (and any other packages that are not installed automatically) from source, using, for example:

install.packages("RGtk2", type = "source")

[mnosshi]

So far I updated R version 3.4.1, and installed devtools. I am working on a mac. None of the required dependencies would install following your instructions above (but those might be for Windows). I am tried to open terminal an copy/paste: "sudo apt-get install r-cran-cairodevice r-cran-rgtk2 libcairo2-dev libatk1.0-dev libpango1.0-dev libgtk2.0-dev libglib2.0-dev libcurl4-openssl-dev libgdal-dev libproj-dev" and it did not work, even when I replaced "install" with "installer". I am still interested in figuring this out, and appreciate your help. Thanks, Maged

…

On Tue, Jul 11, 2017 at 3:29 PM, Lorenzo Busetto ***@***.***> wrote: First of all, I'd suggest you to also update your "R" version to the latest available. Then, you could try to install RGtk2 (and any other packages that are not installed automatically) from source, using, for example: install.packages("RGtk2", type = "source") — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Acl6rWuIy3QeV32ouB6RdwrMZoOMVlEuks5sM9svgaJpZM4ORAuV> .

[lbusett]

Those are instructions for Ubuntu Linux, so i doubt they work for Mac out of the box. What exactly happens when you try to install RGtk2 from source?

[mnosshi]

Sorry, I am at a loss now. I don't even follow what you are asking because half of the language on https://github.com/lbusett/MODIStsp is abstract to me. At best, I can follow detailed instructions for downloading MODIStsp on a mac with R version ###. I am new to these tools and there can not be too much detail in my case. If you can help, thanks! Maged

…

On Wed, Jul 12, 2017 at 12:52 PM, Lorenzo Busetto ***@***.***> wrote: Those are instructions for Ubuntu Linux, so i doubt they work for Mac out of the box. What exactly happens when you try to install RGtk2 from source? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Acl6rYvfuvGQUIu_eOMra3las6ZxNh_sks5sNQfSgaJpZM4ORAuV> .

[lbusett]

I meant: what happens when you issue the command:

install.packages("RGtk2", type = "source")

can you share the error message ?
Lorenzo

[mnosshi]

I have a few questions, but first, here is the error code after running install.packages("RGtk2", type = "source") * installing *source* package ‘RGtk2’ ... ** package ‘RGtk2’ successfully unpacked and MD5 sums checked checking for pkg-config... no checking for INTROSPECTION... no checking for GTK... no configure: error: GTK version 2.8.0 required ERROR: configuration failed for package ‘RGtk2’ * removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RGtk2’ Warning in install.packages : installation of package ‘RGtk2’ had non-zero exit status The downloaded source packages are in ‘/private/var/folders/dd/dczsr34x44z7t5g9pylx0skh0000gn/T/RtmpwMwzrf/downloaded_packages’ - Which set of installation instructions apply to a mac, is it the same as *Debian and Ubuntu-based* systems, or *rpm-base systems, or something entirely different?* - *When I updated R, this note was highlighted in the release regarding downloading packages from source: **Important:* this release uses Clang 4.0.0 and GNU Fortran 6.1, neither of which is supplied by Apple. If you wish to compile R packages from sources, you will need to download and install those tools - see the tools <https://cran.r-project.org/bin/macosx/tools/> directory. I was not sure, so I downloaded gfortran-6.3-Sierra. *Maged*

…

On Wed, Jul 12, 2017 at 5:58 PM, Lorenzo Busetto ***@***.***> wrote: I meant: what happens when you issue the command: install.packages("RGtk2", type = "source") can you share the error message ? Lorenzo — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Acl6rU6xsSVHDMwP4Ey6fQFHmL7eNScaks5sNU-KgaJpZM4ORAuV> .

[lbusett]

Hi. We currently don't have installation instructions for mac, sorry. The problem seems to be related to gtk installation. You can try to follow the instructions for Mac that you find here: https://gist.github.com/sebkopf/9405675 On 13 Jul 2017 16:43, "mnosshi" <[email protected]> wrote: I have a few questions, but first, here is the error code after running install.packages("RGtk2", type = "source") * installing *source* package ‘RGtk2’ ... ** package ‘RGtk2’ successfully unpacked and MD5 sums checked checking for pkg-config... no checking for INTROSPECTION... no checking for GTK... no configure: error: GTK version 2.8.0 required ERROR: configuration failed for package ‘RGtk2’ * removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RGtk2’ Warning in install.packages : installation of package ‘RGtk2’ had non-zero exit status The downloaded source packages are in ‘/private/var/folders/dd/dczsr34x44z7t5g9pylx0skh0000gn /T/RtmpwMwzrf/downloaded_packages’ - Which set of installation instructions apply to a mac, is it the same as *Debian and Ubuntu-based* systems, or *rpm-base systems, or something entirely different?* - *When I updated R, this note was highlighted in the release regarding downloading packages from source: **Important:* this release uses Clang 4.0.0 and GNU Fortran 6.1, neither of which is supplied by Apple. If you wish to compile R packages from sources, you will need to download and install those tools - see the tools <https://cran.r-project.org/bin/macosx/tools/> directory. I was not sure, so I downloaded gfortran-6.3-Sierra. *Maged*

On Wed, Jul 12, 2017 at 5:58 PM, Lorenzo Busetto ***@***.***> wrote: I meant: what happens when you issue the command: install.packages("RGtk2", type = "source") can you share the error message ? Lorenzo — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/

Acl6rU6xsSVHDMwP4Ey6fQFHmL7eNScaks5sNU-KgaJpZM4ORAuV>

.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AERdjTLtuscWq6biOZQp5MH1Ca1mzmFzks5sNi0QgaJpZM4ORAuV> .

[mnosshi]

I just tried the workaround for MacOS and got the following warning after I ran install.packages("RGtk2", depen=T, type="source"): Warning in install.packages : installation of package ‘RGtk2’ had non-zero exit status What next? Maged On Thu, Jul 13, 2017 at 10:41 AM, Lorenzo Busetto <[email protected]> wrote:

…

Hi. We currently don't have installation instructions for mac, sorry. The problem seems to be related to gtk installation. You can try to follow the instructions for Mac that you find here: https://gist.github.com/sebkopf/9405675 On 13 Jul 2017 16:43, "mnosshi" ***@***.***> wrote: I have a few questions, but first, here is the error code after running install.packages("RGtk2", type = "source") * installing *source* package ‘RGtk2’ ... ** package ‘RGtk2’ successfully unpacked and MD5 sums checked checking for pkg-config... no checking for INTROSPECTION... no checking for GTK... no configure: error: GTK version 2.8.0 required ERROR: configuration failed for package ‘RGtk2’ * removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RGtk2’ Warning in install.packages : installation of package ‘RGtk2’ had non-zero exit status The downloaded source packages are in ‘/private/var/folders/dd/dczsr34x44z7t5g9pylx0skh0000gn /T/RtmpwMwzrf/downloaded_packages’ - Which set of installation instructions apply to a mac, is it the same as *Debian and Ubuntu-based* systems, or *rpm-base systems, or something entirely different?* - *When I updated R, this note was highlighted in the release regarding downloading packages from source: **Important:* this release uses Clang 4.0.0 and GNU Fortran 6.1, neither of which is supplied by Apple. If you wish to compile R packages from sources, you will need to download and install those tools - see the tools <https://cran.r-project.org/bin/macosx/tools/> directory. I was not sure, so I downloaded gfortran-6.3-Sierra. *Maged* On Wed, Jul 12, 2017 at 5:58 PM, Lorenzo Busetto ***@***.*** > wrote: > I meant: what happens when you issue the command: > > install.packages("RGtk2", type = "source") > > can you share the error message ? > Lorenzo > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#82 (comment)>, > or mute the thread > <https://github.com/notifications/unsubscribe-auth/ Acl6rU6xsSVHDMwP4Ey6fQFHmL7eNScaks5sNU-KgaJpZM4ORAuV> > . > — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ AERdjTLtuscWq6biOZQp5MH1Ca1mzmFzks5sNi0QgaJpZM4ORAuV> . — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Acl6raxRTLwpqOFLXu10akOFOEroJA9jks5sNjqRgaJpZM4ORAuV> .

[mnosshi]

is RGtk2 on CRAN? Maged

…

On Thu, Jul 13, 2017 at 11:09 AM, Maged Nosshi ***@***.***> wrote: I just tried the workaround for MacOS and got the following warning after I ran install.packages("RGtk2", depen=T, type="source"): Warning in install.packages : installation of package ‘RGtk2’ had non-zero exit status What next? Maged On Thu, Jul 13, 2017 at 10:41 AM, Lorenzo Busetto < ***@***.***> wrote: > Hi. We currently don't have installation instructions for mac, sorry. > > The problem seems to be related to gtk installation. You can try to follow > the instructions for Mac that you find here: > > https://gist.github.com/sebkopf/9405675 > > > > > On 13 Jul 2017 16:43, "mnosshi" ***@***.***> wrote: > > I have a few questions, but first, here is the error code after > running install.packages("RGtk2", > type = "source") > > * installing *source* package ‘RGtk2’ ... > ** package ‘RGtk2’ successfully unpacked and MD5 sums checked > checking for pkg-config... no > checking for INTROSPECTION... no > checking for GTK... no > configure: error: GTK version 2.8.0 required > ERROR: configuration failed for package ‘RGtk2’ > * removing > ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RGtk2’ > Warning in install.packages : > installation of package ‘RGtk2’ had non-zero exit status > > The downloaded source packages are in > ‘/private/var/folders/dd/dczsr34x44z7t5g9pylx0skh0000gn > /T/RtmpwMwzrf/downloaded_packages’ > > > - Which set of installation instructions apply to a mac, is it the same > as *Debian and Ubuntu-based* systems, or *rpm-base systems, or something > entirely different?* > - *When I updated R, this note was highlighted in the release regarding > downloading packages from source: **Important:* this release uses Clang > 4.0.0 and GNU Fortran 6.1, neither of which is supplied by Apple. If you > wish to compile R packages from sources, you will need to download and > install those tools - see the tools > <https://cran.r-project.org/bin/macosx/tools/> directory. > > I was not sure, so I downloaded gfortran-6.3-Sierra. > *Maged* > > On Wed, Jul 12, 2017 at 5:58 PM, Lorenzo Busetto < > ***@***.***> > wrote: > > > I meant: what happens when you issue the command: > > > > install.packages("RGtk2", type = "source") > > > > can you share the error message ? > > Lorenzo > > > > — > > You are receiving this because you authored the thread. > > > Reply to this email directly, view it on GitHub > > <#82 (comment)>, > > or mute the thread > > <https://github.com/notifications/unsubscribe-auth/ > Acl6rU6xsSVHDMwP4Ey6fQFHmL7eNScaks5sNU-KgaJpZM4ORAuV> > > . > > > > — > You are receiving this because you commented. > > Reply to this email directly, view it on GitHub > <#82 (comment)>, > or mute > the thread > <https://github.com/notifications/unsubscribe-auth/AERdjTLtu > scWq6biOZQp5MH1Ca1mzmFzks5sNi0QgaJpZM4ORAuV> > . > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#82 (comment)>, > or mute the thread > <https://github.com/notifications/unsubscribe-auth/Acl6raxRTLwpqOFLXu10akOFOEroJA9jks5sNjqRgaJpZM4ORAuV> > . >

[lbusett]

Did you manage to install xquartz and gtk+?

[mnosshi]

I installed xquart, but that seems to be the problem according to a comment by @tobybot11 <https://github.com/tobybot11> in the following link: https://gist.github.com/sebkopf/9405675 His comment is specific to my case: *"On macosx Sierra, with R 3.4.0 and homebrew ..* *the basic problem is that Rgtk requires the x11 libraries/headers (gdk/gdkx.h specifically)and doesn't work with the quartz libraries/headers which now is the default for GTK..."* I am not sure what "homebrew" is? nor how he resolved the problem in the configure options. Can you help? Thanks, Maged

…

On Thu, Jul 13, 2017 at 12:14 PM, Lorenzo Busetto ***@***.***> wrote: Did you manage to install xquartz and gtk+? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Acl6rX4xRbjndEmT3dl8bAWomLzvRHRhks5sNlBmgaJpZM4ORAuV> .

[lbusett]

Only thing that comes into mind is to try to downgrade to a previous version of "R" . You could try with 3.3.2

I don't work on mac, so I don't know what homebrew exactly is, but a simple google search gives you this:

https://brew.sh/

[mnosshi]

Thanks for your comment. I had already resolved that problem, and RGtk2 is loaded in R. Now I am still not able to install MODIStsp with: install_github("lbusett/MODIStsp", ref = "master") Also, install.packages("gWidgetsRGtk2") gives: installation of package ‘gWidgetsRGtk2’ had non-zero exit status Maged

…

On Fri, Jul 14, 2017 at 1:34 AM, Lorenzo Busetto ***@***.***> wrote: Only thing that comes into mind is to try to downgrade to a previous version of "R" . You could try with 3.3.2 I don't work on mac, so I don't know what homebrew exactly is, but a simple google search gives you this: https://brew.sh/ — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Acl6rUnFJjNUBZ51Iz0bs1KU8Rzvh8svks5sNwvlgaJpZM4ORAuV> .

[lbusett]

The problem is that until you manage to install gwidgetsrgtk 2, MODIStsp will never work...

Did you already try to install also gWidgets2RGtk2 from source using "R CMD build" on the tarball of the package ?

[mnosshi]

Sorry, the package names are too similar that I need to ask you which ones you meant in this last email. Both gwidgetsrgtk 2, and gWidgets2RGtk2 exist. I am running into problems at this point installing gWidgets2RGtk2 from source using the tarball and R CMD INSTALL gWidgets2RGtk2_1.0-6.tar.gz and can not find any support to resolve this. So at this point I have GDAL, rGDAL, RGtk2. What else am I missing? I am running out of time and ability to do this, but will follow a workaround if one exists. Maged

…

On Mon, Jul 17, 2017 at 12:52 AM, Lorenzo Busetto ***@***.***> wrote: The problem is that until you manage to install gwidgetsrgtk 2, MODIStsp will never work... Did you already try to install also gWidgets2RGtk2 from source using "R CMD build" on the tarball of the package ? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Acl6rQq7Ddp-2NzbqkrlDUEnwTbmOgeXks5sOvaBgaJpZM4ORAuV> .

[lbusett]

Sorry, I had a typo: you need "gWidgetsRGtk2"

[mnosshi]

Two more dependencies are called for (so far as I can tell): cairoDevice gWidgetsRGtk2 for cairoDevice I tried several things including downloading macports following option 2 here (https://gist.github.com/sebkopf/9405675), but when I run R CMD INSTALL ~/Downloads/cairoDevice_2.24.tar.gz I get * installing *source* package ‘cairoDevice’ ... ** package ‘cairoDevice’ successfully unpacked and MD5 sums checked checking for pkg-config... pkg-config ERROR: gtk+2.0 not found by pkg-config. ERROR: configuration failed for package ‘cairoDevice’ Thanks, maged

…

On Mon, Jul 17, 2017 at 12:07 PM, Lorenzo Busetto ***@***.***> wrote: Sorry, I had a typo: you need "gWidgetsRGtk2" — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Acl6rU5Xo2--AsiyAAVy2GmUC-wfkoC2ks5sO5P_gaJpZM4ORAuV> .

[lbusett]

I'm sorry, but I cannot help you much on this, since I don't t work on Mac. Maybe you could try to contact the authors of those packages to see if they can help.

[mnosshi]

Thanks, I will see what I can figure out. MN

…

On Mon, Jul 17, 2017 at 1:38 PM, Lorenzo Busetto ***@***.***> wrote: I'm sorry, but I cannot help you much on this, since I don't t work on Mac. Maybe you could try to contact the authors of those packages to see if they can help. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Acl6rRS-RiDAAsH8KHBbwy39eMnkUDmFks5sO6otgaJpZM4ORAuV> .

[Marcy-S]

Hi - So I actually had a similar problem and followed this thread up until I successfully installed MODIStsp (see #83 (comment)).

While I can't fully remember all my steps, I had similar error messages pretty much your whole thread. I'm on Sierra 10.12.5 and have R 3.4.1 - with items like CairoDevice and gWidgetsRGtk2, I went directly to CRAN.R and downloaded the older binary "OS X Mavericks" and then used r to install them in R Studio - the lib.loc being where the tgz file downloads.

library("gWidgetsRGtk2", lib.loc="~/Library/R/3.4/library")

I think that is all I ended up doing
I hope this helps.

[lbusett]

So, the trick was just using the old binaries form "mavericks " ?

[Marcy-S]

maybe... it did ask/warn me questions about running source code which I said yes too - to be honest, I don't really understand all that I did since I'm not much of a programmer but it worked... other than it taking ages to download all the images I need, its been great. ~M

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On Tue, Jul 18, 2017 at 12:41 PM, Lorenzo Busetto ***@***.***> wrote: So, the trick was just using the old binaries form "mavericks " ? — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AcogElahX3lCUOLUuVGxKTsn0t2nnQXjks5sPIvrgaJpZM4ORAuV> .

[mnosshi]

@Marcy-S Thanks to Marcy-S, the download for gWidgetsRGtk2 worked following these directions for R 3.4, OS X Sierra: - Find gWidgetsRGtk2 and cairoDevice in CRAN and download version OS X Mavericks binaries (since version OS X Sierra is not available) - Move the unzipped file to: ~/R.framework/Versions/3.4/Resources/library/gWidgetsRGtk2 - In R studio run: install.packages("gWidgetsRGtk2",lib="~/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gWidgetsRGtk2") This will also install other dependencies, including cairoDevice Next I did install_github("lbusett/MODIStsp", ref = "master") while the package loaded ok, no errors, when I try *MODIStsp()* I get.. Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘.gwindow’ for signature ‘"guiWidgetsToolkitRGtk2"’

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On Tue, Jul 18, 2017 at 7:30 AM, Marcy-S ***@***.***> wrote: maybe... it did ask/warn me questions about running source code which I said yes too - to be honest, I don't really understand all that I did since I'm not much of a programmer but it worked... other than it taking ages to download all the images I need, its been great. ~M On Tue, Jul 18, 2017 at 12:41 PM, Lorenzo Busetto < ***@***.***> wrote: > So, the trick was just using the old binaries form "mavericks " ? > > — > You are receiving this because you commented. > Reply to this email directly, view it on GitHub > <#82 (comment)>, > or mute the thread > <https://github.com/notifications/unsubscribe-auth/ AcogElahX3lCUOLUuVGxKTsn0t2nnQXjks5sPIvrgaJpZM4ORAuV> > . > — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Acl6rcGIPXnr7gZVV8orpwfE3g8UqHr4ks5sPKVTgaJpZM4ORAuV> .

[lbusett]

@Marcy-S Good, and thanks for the hints.

Concerning the speed of the download, I'd suggest you to activate the "use aria2c" option within MODIStsp, if you didn't do that already (see section 3.3 of the package vignette)
.

[lbusett]

@mnosshi

I get..
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function ‘.gwindow’ for signature
‘"guiWidgetsToolkitRGtk2"’

This is a new one.... Can you please try to:

1. Close and restart RStudio

2. Load just the gWidgetsRGtk2 library

   library("gWidgetsRGtk2")

and tell me if it loads properly ?

[mnosshi]

gWidgetsRGtk2 loads with no errors in R

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On Tue, Jul 18, 2017 at 10:30 AM, Lorenzo Busetto ***@***.***> wrote: @mnosshi <https://github.com/mnosshi> I get.. Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘.gwindow’ for signature ‘"guiWidgetsToolkitRGtk2"’ This is a new one.... Can you please try to: 1. Close and restart RStudio 2. Load just the gWidgetsRGtk2 library library("gWidgetsRGtk2") and tell me if it loads properly ? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Acl6rZBj594Bvys487NrYfDKgzi2H-ucks5sPM-MgaJpZM4ORAuV> .

[mnosshi]

was this the correct install choice? install_github("lbusett/MODIStsp", ref = "master")

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On Tue, Jul 18, 2017 at 10:33 AM, Maged Nosshi ***@***.***> wrote: gWidgetsRGtk2 loads with no errors in R On Tue, Jul 18, 2017 at 10:30 AM, Lorenzo Busetto < ***@***.***> wrote: > @mnosshi <https://github.com/mnosshi> > > I get.. > Error in (function (classes, fdef, mtable) : > unable to find an inherited method for function ‘.gwindow’ for signature > ‘"guiWidgetsToolkitRGtk2"’ > > This is a new one.... Can you please try to: > > 1. > > Close and restart RStudio > 2. > > Load just the gWidgetsRGtk2 library > > library("gWidgetsRGtk2") > > and tell me if it loads properly ? > > — > You are receiving this because you were mentioned. > Reply to this email directly, view it on GitHub > <#82 (comment)>, > or mute the thread > <https://github.com/notifications/unsubscribe-auth/Acl6rZBj594Bvys487NrYfDKgzi2H-ucks5sPM-MgaJpZM4ORAuV> > . >

[mnosshi]

Could the problem be with library(gWidgetstcltk)
when I load that I get this error:

Loading required package: tcltk

Error: package or namespace load failed for ‘tcltk’:
.onLoad failed in loadNamespace() for 'tcltk', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/tcltk/libs/tcltk.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.4/Resources/library/tcltk/libs/tcltk.so, 10): Library not loaded: /opt/X11/lib/libfontconfig.1.dylib
Referenced from: /usr/local/lib/libtk8.6.dylib
Reason: Incompatible library version: libtk8.6.dylib requires version 11.0.0 or later, but libfontconfig.1.dylib provides version 10.0.0
Error: package ‘tcltk’ could not be loaded

[lbusett]

Yes. with that it should definitely work. I tried it right now on my machine.

Maybe try to remove the package, close and reopen rtstudio and install again.

çLet me know.

[mnosshi]

Can you tell me if I need library(gWidgetstcltk) Thanks m

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On Tue, Jul 18, 2017 at 10:41 AM, Lorenzo Busetto ***@***.***> wrote: Yes. with that it should definitely work. I tried it right now on my machine. Maybe try to remove the package, close and reopen rtstudio and install again. çLet me know. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Acl6rQMXcSdlekRfSPWQyVx7TNMxycn_ks5sPNJFgaJpZM4ORAuV> .

[lbusett]

no. You don't need that. Why ?

[mnosshi]

I think I got it.. Thanks for your help/patience! and linking me with others working on installing MODIStsp on mac OS X. now I can worry about how to use it, and I already have a question: if I downloaded the HDF files from https://lpdaac.usgs.gov/ can I still use the package to process them (export as Gtiff, reproject, correction factor...)? [image: Inline image 2] +m

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On Tue, Jul 18, 2017 at 10:48 AM, Lorenzo Busetto ***@***.***> wrote: no. You don't need that. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#82 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Acl6rXygIZOxg9VAVa3bnJVLO5s8KTuDks5sPNNYgaJpZM4ORAuV> .

[mnosshi]

once I have my notes together I will be happy to post them, try to retrace my steps because this was not a walk in the park +m

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On Tue, Jul 18, 2017 at 12:19 PM, Maged Nosshi ***@***.***> wrote: I think I got it.. Thanks for your help/patience! and linking me with others working on installing MODIStsp on mac OS X. now I can worry about how to use it, and I already have a question: if I downloaded the HDF files from https://lpdaac.usgs.gov/ can I still use the package to process them (export as Gtiff, reproject, correction factor...)? [image: Inline image 2] +m On Tue, Jul 18, 2017 at 10:48 AM, Lorenzo Busetto < ***@***.***> wrote: > no. You don't need that. > > — > You are receiving this because you were mentioned. > Reply to this email directly, view it on GitHub > <#82 (comment)>, > or mute the thread > <https://github.com/notifications/unsubscribe-auth/Acl6rXygIZOxg9VAVa3bnJVLO5s8KTuDks5sPNNYgaJpZM4ORAuV> > . >

[lbusett]

Hi. Glad that you managed in the end!

Concerning the possibility to use already downloaded hdfs, you can definitely do that. Put all the images on one folder, and set the parameters in the gui as for a normal processing. set the option regarding the folder where original modis hdfs should be store to the folder where you have your hdfs and start the processing. MODIStsp will detect the available hdfs and skip the download phase.

If you have problems, feel free to open another issue (I'm closing this now).