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wlandau avatar wlandau commented on June 11, 2024 1

tar_make() runs the pipeline in a new R session (a callr::r() process) and that new session usually only has the environment variables from the project's .Renviron. That is probably why the error happens only inside your pipeline and not rmarkdown::render() outside the pipeline. I recommend the project-level .Renviron workaround you proposed.

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CorradoLanera avatar CorradoLanera commented on June 11, 2024

Additional notes:

  • put Sys.setenv("RSTUDIO_VERSION" = '2021.09.0') in the setup chunk of the Rmd (as suggested in the mentioned SO question) works.
  • put withr::local_envvar(list(RSTUDIO_VERSION = '2021.09.0')) in the setup chunk of the Rmd does not work.
  • set RSTUDIO_VERSION="2021.09.0" in a project's .Renviron works.
  • source as local job
    # run.R
    withr::with_envvar(
      list(RSTUDIO_VERSION = "2021.09.0"),
      targets::tar_make()
    )
    (instead of the simple targets::tar_make() alone) works.
  • source as local job
    # run.R
    withr::local_envvar(list(RSTUDIO_VERSION = "2021.09.0"))
    targets::tar_make()
    does not work.

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