Name: Catherine Ross
Type: User
Company: University of Toronto
Bio: Senior Bioinformatician @ Genentech / MSc @ UofT
Twitter: cthrnrss
Location: Toronto
I am a bioinformatics analyst at the Donnelly Centre who uses R, along with other programming tools, to create captivating graphics and software packages. I have years of experience in genomic data analysis, computational experiment design, and package development. Check out my latest package fedup that was recently accepted in Bioconductor 📦 🌟
aboutsnp
:round_pushpin: SNP functional annotation via AnnoVar
biocstickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
courses
:pencil2: Code for various online courses
ctl_kl2019
:page_facing_up: Exploratory analysis for "Functional genomic landscape of cancer-intrinsic evasion of killing by T cells"
ctl_kl2020
:page_facing_up: Code to develop figures and tables for "Functional genomic landscape of cancer-intrinsic evasion of killing by T cells"
deephlapan
A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides and the potential immunogenicity of pMHC
enrichgi
:bar_chart: GSEA analysis and basic visualization of genetic interaction data
events
University of Toronto Coders Events
fasn_ma2020
:page_facing_up: Code to develop plots for "Systematic mapping of genetic interactions for de novo fatty acid synthesis identifies C12orf49 as a regulator of lipid metabolism"
fedup
:fishing_pole_and_fish: Bioconductor package for pathway enrichment and depletion analysis via a Fisher's exact test on custom test sets and annotations
fedupshiny
:fishing_pole_and_fish::sparkles: Shiny implementation of the Bioconductor {fedup} package developed with the {golem} framework
fgsea
Fast Gene Set Enrichment Analysis
github-readme-stats
:zap: Dynamically generated stats for your github readmes
gpredictor
:dna: Predict CRISPR gRNA effectiveness using suite of softwares as outlined by He et al. 2019
multigiviewer
:flashlight: Interactive R Shiny web application built with the {golem} framework to view multi-screen genetic interaction data
rosscm
:ok_woman: Learn a bit about [read]me
rosscm.github.io
:gem: Code for personal website built with Beautiful Jekyll
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
