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10xbc

Start of a python script for collecting 10X barcode metrics at given genome coordinates.

bwa-mei

Polymorphic MEI detection pipeline for NGS data processed by speedseq

complete-striped-smith-waterman-library

cp-demo

Confluent Platform Demo including Apache Kafka, ksqlDB, Control Center, Schema Registry, Security, Schema Linking, and Cluster Linking

dee

Learning Dlang

django_tutorial

Repo tracking my progress through the django tutorial.

docker-alpine-biogo

Biogo environment from golang:alpine image

docker-discordpy-playlist

discord.py's playlist.py contained (with some added envs)

docker-fastqc

docker-latex

docker-longranger

Docker File for Running 10X Genomics Long Ranger Aligner

docker-melt

Docker container for running MELT on McDonnell Genome Institute cluster

docker-sambamba

Container for running sambamba

docker-samblaster

Container supporting Samblaster

docker-speedseq

Container supporting SpeedSeq

dot

Dotfiles for Debian on Thinkpads

dotfiles

a collection of my dotfilez

genotype

Genotyping coding challenge

helm

The Kubernetes Package Manager

lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

meistro

melter

Bash script for automating MELT on the LSF cluster computing platform.

minesweeper

Throwback to an old C++ project from college.

mobtyper

Genotyping script for Mobster mobile element insertion variant calls. Based on svtyper by cc2qe

picard

Testing picard container

poretools

a toolkit for working with Oxford nanopore data

resume

My resume in LaTeX, based on Sourabh Bajaj's resume template. Builds PDF and PNG on push using CircleCI.

rpseq.github.io

Starting Point for Jekyll Blog.

rpseq.github.io_old

rscripts

Etc R scripts for plotting. Not organized / generalized.