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Jue Ruan's Projects

bsalign icon bsalign

Banded Striped DNA Sequence Alignment

filterx icon filterx

A tool that manipulate tab-delimited files

gaep icon gaep

A genome assembly assessment pipeline. (Developed By ZHANG Yong from CAAS)

kuafu icon kuafu

Alignment and assembly of pair-end short reads (Unfinished)

pgzf icon pgzf

Parallel blocked gzip file IO

smartdenovo icon smartdenovo

Ultra-fast de novo assembler using long noisy reads

sry icon sry

SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome. (Developed by WANG Xiaobo from CAAS)

wtdbg icon wtdbg

A fuzzy Bruijn graph approach to long noisy reads assembly

wtdbg2 icon wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

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