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ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

ads1-slides

Slides for Algorithms for DNA Sequencing Coursera class

alien_invasion

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bioblend

A Python library for interacting with CloudMan and Galaxy API

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics_module

biopython

Official git repository for Biopython (originally converted from CVS)

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

covid19-literature-clustering

Let's cluster similar research articles together to make it easier for health professionals to find relevant research articles, and responde to rapidly spreading COVID-19 promptly.

d3-book

Code examples for “Interactive Data Visualization for the Web”

data-science-from-scratch

code for Data Science From Scratch book

deepts

deepTS explores transcriptional switch events from pairwise, temporal and population transcriptome data.

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

extract_sequence

fastv

An ultra-fast tool to detect viral sequence from sequencing data for detection of viral infectious diseases, like COVID-19

google-prompt-to-prompt

lianjia-scrawler

链家二手房租房在线数据，存量房交易服务平台数据，详细数据分析教程

nerds

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

python-100-days

Python - 100天从新手到大师

python-guide

Python best practices guidebook, written for humans.

rnaseq

RNASeq pipeline

starter-workflows

Accelerating new GitHub Actions workflows

the-craft-of-selfteaching

One has no future if one couldn't teach themself.

toil

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

zenruan

This is my personal web site