Comments (5)
Joon-20
commented on August 17, 2024
1
It worked perfectly well after using the correct custom version.
Thank you very much! -Joon
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rvolden
commented on August 17, 2024
Check on the water messages file to see what went wrong with the alignment. It looks like water didn't run
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Joon-20
commented on August 17, 2024
This was the message I found in the SW.txt file :
Error: Argument 'yes' : Too many parameters 4/3
Thanks!
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rvolden
commented on August 17, 2024
Are you using our custom version of water or the normal EMBOSS version? This command should work with our version of water, but won't work the original.
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Joon-20
commented on August 17, 2024
Yes, we are using the 6.6.0 version of water.
Let me check with our IT people to see it is the custom version or not.
Thanks!
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Related Issues (20)
- No fastq files generated HOT 3
- Issues with C3POa.py: cannot execute gonk HOT 15
- Issues when running C3POa.py HOT 10
- C3POa.py: AttributeError: 'tuple' object has no attribute 'append' HOT 17
- Error when running C3POa.py HOT 1
- Error when running C3Poa.py with 10x R2C2 nanopore data HOT 11
- duplicate subread record issue HOT 3
- Error when using bsub HOT 2
- Number of repeats used for consensus HOT 9
- <determine_consensus.py> <pyabpoa.msa_aligner.msa> IndexError: list index out of range
- Very few subreads and consensus reads despite many reads after preprocessing HOT 1
- Calling Consensi Hang HOT 2
- DNA splint sequence HOT 1
- Splint and adapter sequences : B-Cell dataset HOT 3
- C3POa_preprocessing halts when parsing splint blat alignments HOT 7
- question and IndexError: list index out of range HOT 5
- Confusion about the C3POa_preprocessing.py and C3POa_postprocessing.py results ? HOT 3
- how to remove the 3' 5' adapeters or the ployA tail form the postprocessing sequences HOT 1
- Question about -d parameter? HOT 6
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