ryan2han Goto Github PK

ant-learn-pandas

pandas学习课程代码仓库

atlas_protocol

A computational protocol for atlas-level data integration and analysis as performed in Salcher et al. (2022).

cbcrg_alphafold

CBCRG fork of the open source code for AlphaFold for nf-core/proteinfold

cell-state-atlas-2022

Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney

checkatlas

One liner tool to check the quality of your single-cell atlases.

luca

Single-cell Lung Cancer Atlas with 1.2M cells

marginexpand

MarginExpand用于解决阅读pdf、电子书和论文时做笔记地方不够的问题，MarginExpand可以实现Pdf margin expand功能，可批量为pdf文件添加白边，实现裁切功能，并且可以挑选纸张的样式，非常适合电子笔记爱好者。本项目用python，pyqt，pyside2开发，可以独立运行在windows系统。MarginExpand is used to solve the problem of insufficient space for taking notes when reading pdfs, e-books and papers. MarginExpand can realize the Pdf margin expand function

nf-training-advanced

Customer workshop materials

nmp-liver

Single cell analysis of donor livers pre- and post machine perfusion

nsforest

A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing

openproblems

Formalizing and benchmarking open problems in single-cell genomics

package_write_template

panpipes

Multi-modal single cell analysis pipelines

scdrake

A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like pipeline toolkit for the R language.

scflow

Complete analysis workflow for single-cell/nuclei RNA-sequencing data.

scflowpy

Python helper package for scFlow

scib

Benchmarking analysis of data integration tools

scib-metrics

Accelerated, Python-only, single-cell integration benchmarking metrics

scib-pipeline

Snakemake pipeline that works with the scIB package to benchmark data integration methods.

scplc

Codes for the scPLC project

scrna-seq_contamination

shadowsocksr-windows

Ship of Theseus

single-cell-best-practices

https://www.sc-best-practices.org

single-cell-data-visualization-tools

Collection of single-cell data visualization tools.

tabula-muris-senis

Tabula Muris Senis

video-source-code

source code used in my uploaded videos

workshop-scrnaseq

Single cell RNA sequencing analysis course

youtubetutorials