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arcplot

Code for plotting arcs

bcd_nano_cutntag

Multimodal chromatin analysis workflow

comrades

A program for folding RNA using constraints from proximity ligation experiments

comradesoo

The Analysis of COMRADES data for RNA structure prediction

crssant

Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)

dancemapper

hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

hyb

hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data

longread_umi

Demultiplexing of dual-UMI barcodes

ringmapper

Code for performing RING-MaP and PAIR-MaP analysis

rnaframework

RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis

rnanue

RNAnue

splishsplash

Software to analyse RNA:RNA interactome data from high-throughput sequencing experiments (SPLASH, COMRADES, PARIS, LIGR-seq)

structural_motifs

szymon