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bio-pipeline

Sample Version Control Repository for Tufts SWC Boot Camp

gui

Software for electrophysiology data acquisition

hmm_hpcc

code to batch HM model ensemble spiketrains

kilosort

GPU code for spike sorting

matlab-api

MATLAB Online Toolbox - Create interactive charts in your web browser with MATLAB and Plotly

mle_rhythmicity

An improved method for examining neural single unit rhythmicity using maxmimun likelihood estimation for a parametric distribution of lags.

mxnet-the-straight-dope

An interactive book on deep learning. Much easy, so MXNet. Wow.

niv_rl_challenge2016

quick python functions for loading and modeling rat reversal task data, and a master script to do everything with some extra notes

oep_processing

initial data processing scripts and functions for wrangling open-ephys data formats to formats usable for a range of spike sorting solutions (e.g. *.dat for klustasuite), and template code to import behavioral files from lab standard *.tst (and in time, from clb and med behavioral files)

ofc_spc_17

Scripts and functions for the analysis of orbitofrontal cortex single-unit data collected during sensory preconditioning

plotpub

Publication quality plot in MATLAB.

pynamestate

convert data from the SSI name index into a format suitable for clustering states and years by how similarly people name their children

rattouchscreentask

rmdformats

HTML output formats for RMarkdown documents

rtb-papers

A collection of research and survey papers of real-time bidding (RTB) based display advertising techniques.

seinfeld

spikesorting.jl

Online spike sorting methods in Julia

spyking-circus

Fast and scalable spike sorting in python

tensorflow

Computation using data flow graphs for scalable machine learning

test_html_jekyll

this is a test

transformer_examples

A few example notebooks using the transformers library for search and classification

wave_clus

A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering

wine-findr

repository for a shiny app by the same name

winer

scraping, extracting, and analyzing wine reviews (in R)

xgboost

Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Flink and DataFlow

xtt

time tracker: think private 'twitter' that counts the duration of status messages.

xttc

A command line bot for working with XTT, ENTP's rad time tracking app