Error running multi_nichenet_analysis() in "Combine all the information in prioritization tables" step

[lchan8]

Error running multi_nichenet_analysis() in "Combine all the information in prioritization tables" step

[lchan8]

I got the function to work after making my own version and deleting "rm(sce)". When I moved "rm(sce) to after "metadata_combined = SummarizedExperiment::colData(sce) %>% tibble::as_tibble()", the function did not finish running and I got the following warning:

[1] "Combine all the information in prioritization tables"
Warning: cannot open compressed file '/Users/lchan8/.local/share/rstudio/notebooks/D870D146-MultiNicheNet_vignette/1/9A6E152Da699236c/cgn9i4w3xdvgb_t/_rs_rdf_16432566a4a75.rdf', probable reason 'No such file or directory'Error in gzfile(file, "wb") : cannot open the connection

Is this an appropriate fix to my problem, or is there some other underlying problem? Thank you.

[browaeysrobin]

Hi @lchan8

Thank you for pointing this out. There seems to be a bug in the wrapper function. This should be fixed now after reinstalling multinichenetr. Let me know if you still get an error. In that case, also give more details about the analysis you ran (eg from which vignette you started etc).