Comments (2)
Indeed using dense matrix can lead to memory issues for very very large PKN's. Can someone test the slution of @skapur on a case study simply by replacing lines 21-23 with the line that Vitor wrote? Then try this out on a couple of examples to be sure this works. However believe that solution given should work.
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Fixed in new dev version. No adj matrix is needed anymore.
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Related Issues (20)
- Feature Request: Omnipath network from original paper HOT 2
- Very different results with latest CARNIVAL release HOT 5
- Wrong column name inside the measurementsDf? HOT 1
- cbc error : 'data' must be of a vector type, was 'NULL' despite solution found HOT 1
- Reported 0 for perturbations activity HOT 1
- No DOT figure HOT 1
- Gurobi needs documentation
- How to use CARNIVAL to fit multiple conditions data HOT 2
- Some issues HOT 2
- Failing tests because local files were used HOT 1
- runCARNIVAL HOT 1
- Error in file(file, "rt"): cannot open the connection HOT 2
- progenyMembers.RData HOT 2
- Description about the output HOT 4
- error running Carnival with cbc solver HOT 1
- Carnival usage error HOT 2
- Transcription factors (TFs) absent from final carnival result HOT 12
- [BUG] Your bug or feature request HOT 3
- Using custom network for transcription factor input HOT 11
- General Recommendations for preprocessing RNA-Seq data HOT 2
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