Comments (2)
Don't need to rework the log output so that the timestamps are comments as users can easily use awk to strip out the time stamps. Documenting this on the Wiki and in the ngs.sh file.
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Update file name based on module run. Be sure that when PIPELINE calls other modules the log filename doesn't get changed.
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Related Issues (20)
- Better control over trimming HOT 1
- SPAdes version number HOT 1
- Update STATS to include program version numbers and genome library names. HOT 1
- Add error checking for SNP and SPAdes HOT 1
- Document API for modules
- HTSEQ needs stats function.
- Integrate prnVersion() into existing modules HOT 1
- Update args processing in all modules
- BLASTDB argument processing
- PIPELINE should pull modules from file HOT 1
- STAR version number
- parseBlast.py needs versioning
- STATS should include the contents of sampleID.version HOT 1
- change HTSEQ version information
- TRIM version information
- Generate module-specific version numbers HOT 1
- Decouple directories and module names HOT 1
- BLAST hits not counted
- Trim location output
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