Comments (2)
Hi @wr0112358
Thank you for reporting the problem! I opened an internal ticket to track this: https://sagebionetworks.jira.com/browse/SYNPY-998
I'm working on improving the Synapse Python client. In the mean time, you may want to check out downloading files from a View as a workaround. Here is my suggestion:
- create a View with an appropriate scope so that it contains the files you want to download
- either download using our web client's download list feature
- or, use Python client
downloadTableColumns
Please let me know if either of the suggestions above helps.
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@wr0112358 sorry for the slow resolution of this issue.
It is resolved as of the latest Python client version 2.1.1. During syncFromSynapse getProvenance is called now once only for each file synced no matter how deeply it is nested within the folder hierarchy and the manifest written to each subdirectory only includes the files rooted (recursively) in that subdirectory rather than every file synced so far whether or not the folder was a parent.
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Related Issues (20)
- `FutureWarning` received when reading in a Synapse table as a data frame HOT 1
- synapseclient.core.exceptions.SynapseHTTPError: 403 Client Error: insufficient_scope. Request lacks scope(s) required by this service: modify HOT 1
- Progress stops during the download HOT 3
- Synapse login not the same with `authToken` and `apiKey` HOT 11
- 2.4.0 release doesn't generate easy_path file HOT 7
- Let the user specify the number of allowed threads HOT 1
- Passing a pandas dataframe with a column called "read" breaks the type parsing in as_table_columns() HOT 2
- Synapse Python Client -> Sign Up error -> Timestamp in request is out of date HOT 2
- login error HOT 2
- Feature Request: Filter capability for syncFromSynapse HOT 1
- Endpoint URL not utilized for external S3 resources HOT 3
- Update Entity class to be compatible with the new Dataset entity
- as_table_columns function is mishandling mixed data types HOT 1
- build_table error HOT 1
- utils' `is_synapse_id` does not work as intended HOT 3
- [Feature request] Add `is_synapse_id` to the client
- Caching is not working for function `_queryTableCsv` function HOT 2
- Upgrade to Pandas 2.0
- ImportError: urllib3 v2.0 only supports OpenSSL 1.1.1+ HOT 5
- [Bug] unexpected keyword argument 'line_terminator' HOT 2
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