sajadtavakoli Goto Github PK

art

🎨 ASCII art library for Python

burrows_wheeler_alignment

A python implementation of the Burrows Wheeler Alignment for DNA sequence matching

cancer-essential-gene

conv_arithmetic

A technical report on convolution arithmetic in the context of deep learning

cutesv

Long read based human genomic structural variation detection with cuteSV

datastructuresforbioinformatics

Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata

dbpedia-contents-classification

Classifying Contents in DbPedia dataset using a VGG-based network

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

easy-gt

eca-bioinf-handbook

Lecture notes/book in progress on computing for conservation genomics

exphormer

Exphormer: Sparse Transformer for Graphs

fastai

The fastai deep learning library

freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

hpp_year1_assemblies

Assemblies from HPP Year 1 production

hprc-workshop

workshop on pggb given at the HPRC annual meeting 2022

mamnet

MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data.

mask_rcnn

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

ml-geneticpathotyping

pangenie

Pangenome-based genome inference

scientific_python_cheat_sheet

simple overview of python, numpy, scipy, matplotlib functions that are useful for scientific work

seqwish

alignment to variation graph inducer

svcnn

svim

Structural Variant Identification Method using Long Reads

svision

Detecting genome structural variants with deep learning in single molecule sequencing

ultralytics

NEW - YOLOv8 🚀 in PyTorch > ONNX > OpenVINO > CoreML > TFLite

unet

unet for image segmentation

variantnet

A simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference

vg

tools for working with genome variation graphs

vit-tensorflow

Vision Transformer Cookbook with Tensorflow

wbc_feature

Classification of White Blood Cells in Peripheral Smear Images