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Getting study info from SRR id about pysradb HOT 3 CLOSED

eul2021 avatar eul2021 commented on July 20, 2024
Getting study info from SRR id

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Comments (3)

saketkc avatar saketkc commented on July 20, 2024 2

With the latest changes on master, you should be able to print the study_title:

pysradb metadata --detailed DRR062876

run_accession	study_accession	study_title	experiment_accession	experiment_title	experiment_desc	organism_taxid 	organism_name	library_name	library_strategy	library_source	library_selection	library_layout	sample_accession	sample_title	instrument	instrument_model	instrument_model_desc	total_spots	total_size	run_total_spots	run_total_bases	run_alias	sra_url	experiment_alias	Ontology ID	cell_type	company	rna_catalog	ena_fastq_http	ena_fastq_http_1	ena_fastq_http_2	ena_fastq_ftp	ena_fastq_ftp_1	ena_fastq_ftp_2
DRR062876 DRP001150 A promoter level mammalian expression atlas (human, RNA-Seq) DRX057117 10199-103F1_RDhi10060 10199-103F1_RDhi10060 9606 Homo sapiens RDhi10060 RNA-Seq TRANSCRIPTOMIC unspecified SINGLE DRS008595 <NA> Illumina HiSeq 2000 Illumina HiSeq 2000 ILLUMINA 169510397 12224066915 169510397 17120550097 DRR062876 https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/DRR062876/DRR062876.1 DRX057117 FF:10199-103F1 CELL MIXTURE - tissue sample Biochain R1234190-50 <NA> <NA> <NA> <NA> <NA> <NA>

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saketkc avatar saketkc commented on July 20, 2024

Thanks for the suggestion. I think we should be able to support it.

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eul2021 avatar eul2021 commented on July 20, 2024

Thank you very much, Saket.

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