[BUG] Example download doesn't work

[MrOlm]

[BUG] Example download doesn't work

[saketkc]

Thanks, I can confirm that it is currently broken. For now I could recommend dumping the metadata in a tsv and then using the sra_url field to download:

$ pysradb srx-to-srr SRX4720625 --detailed  --saveto x.tsv

experiment_accession	run_accession	study_accession	study_title	experiment_title	experiment_desc	organism_taxid 	organism_name	library_name	library_strategy	library_source	library_selection	library_layout	sample_accession	sample_title	instrument	instrument_model	instrument_model_desc	total_spots	total_size	run_total_spots	run_total_bases	run_alias	sra_url_alt	sra_url	AWS_url	AWS_free_egress	AWS_access_type	experiment_alias	source_name	tissue	developmental stage	gfp status	genetic background	ena_fastq_http	ena_fastq_http_1	ena_fastq_http_2	ena_fastq_ftp	ena_fastq_ftp_1	ena_fastq_ftp_2
SRX4720625 SRR7882015 SRP162234 Transcriptomic profile of zebrafish cardiomyocytes throughout heart development GSM3396533: wt_GFPpos_24hpf_rep1; Danio rerio; RNA-Seq GSM3396533: wt_GFPpos_24hpf_rep1; Danio rerio; RNA-Seq 7955 Danio rerio <NA> RNA-Seq TRANSCRIPTOMIC cDNA PAIRED SRS3805811 <NA> NextSeq 500 NextSeq 500 ILLUMINA 47867961 3470385670 47867961 7230485009 GSM3396533_r1 s3://sra-pub-src-3/SRR7882015/RNA_cardio_pos_24hpf_rep_1_R2.fq.gz https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR7882015/SRR7882015 https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR7882015/SRR7882015 worldwide anonymous GSM3396533 FACS-sorted embryo cells FACS-sorted embryo cells 24 hpf GFP positive wild type <NA> http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR788/005/SRR7882015/SRR7882015_1.fastq.gz http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR788/005/SRR7882015/SRR7882015_2.fastq.gz <NA> [[email protected]](mailto:[email protected]):vol1/fastq/SRR788/005/SRR7882015/SRR7882015_1.fastq.gz [[email protected]](mailto:[email protected]):vol1/fastq/SRR788/005/SRR7882015/SRR7882015_2.fastq.gz

[saketkc]

This is now fixed in pysradb v2.1.0