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asciidag

Draw DAGs (directed acyclic graphs) as ASCII art, à la Git

auto-compile

Automatically compile Emacs Lisp libraries

bam-readcount

count DNA sequence reads in BAM files

bammetrics

Tool to generate bam statistics and pdf/html reports.

brew

:beer: The missing package manager for OS X

caffe

Caffe: a fast open framework for deep learning.

cask

Project management tool for Emacs

cbioportal

cBioPortal for Cancer Genomics

cec_lg_off

Hardware fix LG WebOS TVs not reacting HDMI CEC "Power off" command on AliExpress modules.

conda.el

Emacs helper library (and minor mode) to work with conda environments

coveralls-ruby

Coveralls for Ruby

cpanminus

cpanminus - get, unpack, build and install modules from CPAN

dash-ios

Dash gives your iPad and iPhone instant offline access to 200+ API documentation sets

dbi

A database interface (DBI) definition for communication between R and RDBMSs

deepdream

dotfiles

emacs-color-theme-solarized

Emacs highlighting using Ethan Schoonover’s Solarized color scheme

emacs-for-python

Collection of emacs extensions specifically collected for python development, with workflow guidelines!

emacs-traad

Emacs client for the traad Python refactoring tool.

epl

Emacs Package Library

evm

Emacs Version Manager

exoncov

ExonCov: Exon coverage statistics from BAM files

flake8

The official GitHub mirror of https://gitlab.com/pycqa/flake8

fluxgui

Better lighting for Linux. Open source GUI for xflux

fpm

Effing package management! Build packages for multiple platforms (deb, rpm, etc) with great ease and sanity.

freebayes

Bayesian haplotype-based polymorphism discovery and genotyping.

freec

Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

gatk-protected

GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only

git-link

Emacs package to get the GitHub/Bitbucket/GitLab/... URL for a buffer location

git-stats

:four_leaf_clover: A GitHub-like contributions calendar, but locally, with all your git commits.