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Sam Horsfield's Projects

compare_fasta icon compare_fasta

Contains scripts to analysis recall and precision of gene callers.

nanogpt icon nanogpt

The simplest, fastest repository for training/finetuning medium-sized GPTs.

pangpt icon pangpt

A Generative Pre-Trained Transformer Package for Pangenomes

pneumokity icon pneumokity

PneumoKITy - Fast sensitive Pneumococcal Capsular Serotype screening from WGS data

poppunk icon poppunk

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

poppunk-mod icon poppunk-mod

Simulates core and accessory genome divergence and calculates Hamming and Jaccard distances.

unitig-caller icon unitig-caller

Methods to determine sequence element (unitig) presence/absence

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