Sandra Godinho Silva's Projects
π©βπ»π¨βπ» Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.
Some handy scripts to work with antiSMASH and BiG-SCAPE results.
R scripts to join COG and Pfam annotation files coming from WebMGA.
Data and code for the Flavobacteriaceae comparative genomics study (article in construction)
A small workflow to get general information (taxonomy, quality, etc) out of genomes or MAGs
A multilingual glossary for computing and data science terms.
Templates for jupyter notebooks
Custom pipeline to analyse MAGs
Melange - Snakemake workflow for genome annotation
https://sandragodinhosilva.github.io/microbiomes2021/
Some useful code for several programming languages, tools, etc.
A tutorial on how to annotate genomes with virulence factors.