Comments (1)
Make sure bwa-mem2 index
uses the same container
from readmapping.
Related Issues (20)
- Wong location for test data for test_full profile
- Add CRAM compression option
- Reorganise subworkflow execution
- Add multiple output options HOT 1
- Disable BWAMEM2_INDEX when no short read data
- Try minimap2 splice
- Update pipeline template
- Implement nf-validation
- Calculate PacBio filtered data percentage
- Add support for Pacbio ULI reads
- Add support for RNAseq data
- Implement chunking to speed up alignment HOT 1
- Crumble compression for all aligned files
- Support multiple output options HOT 1
- Combine steps with pipes to reduce disk footprint and make the pipeline faster HOT 3
- Can't align PacBio/ONT reads on genomes > 4Gbp HOT 2
- Correct the official DOI of this repository HOT 1
- cram input necessary? HOT 4
- Merqury and Meryl HOT 1
- Embed the BAM headers from the insdcdownload pipeline
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from readmapping.