sanniukin Goto Github PK

abscopynumber

Estimate tumor purity, ploidy and absolute copy numbers from NGS (WGS, WES, Target Sequencing) and Microarray (SNP, aCGH etc.) data, based on absCNseq statistical method.

ascpsra

将速铂下载工具进行封装，以便高效方便地批量下载SRA测序数据。

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

geo

glioblastoma

in-depth-ngs-data-analysis-course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

italk

oppositegenemodule

paddle

PArallel Distributed Deep LEarning: Machine Learning Framework from Industrial Practice （『飞桨』核心框架，深度学习&机器学习高性能单机、分布式训练和跨平台部署）

pyflow-atacseq

ATAC-seq snakemake pipeline

pytorch-handbook

pytorch handbook是一本开源的书籍，目标是帮助那些希望和使用PyTorch进行深度学习开发和研究的朋友快速入门，其中包含的Pytorch教程全部通过测试保证可以成功运行

rna-seq-analysis

RNAseq analysis notes from Ming Tang

rna-seq-example

An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)

sanniu.github.io

sanniukin.github.io

建设个人免费博客

scrna.seq.course

Analysis of single cell RNA-seq data course

single-cell-metabolic-landscape

Pipeline for exploring metebolic heterogeneity at single-cell resolution

single-cell-papers-with-code

Papers with code for single cell related papers