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alphacharges

𝛂Charges: A tool for the quick calculation of partial atomic charges for protein structures from AlphaFoldDB

atomicchargecalculator2

Atomic Charge Calculator II (ACC II) is an application for fast calculation of partial atomic charges.

cablam_data

Contour data for CaBLAM validation in cctbx and MolProbity

channelsdb

ChannelsDB 2 - a comprehensive and regularly updated resource of channels, pores and tunnels

channelsdb-backend-old

channelsdb-frontend

channelsdb-results

chargefw2

The core part of Atomic Charge Calculator II.

confanalyser

diplomka-jo-db-integration

eem_parameters

EEM parameters

fffold

FFFold: A tool for the quick optimisation of protein structures from AlphaFold DB

fragmentselector

The goal of FragmentSelector is selecting a fragment from a protein.

geostd

gesamt_distance

golem

GOLEM: distribution of Gene regulatOry eLEMents within the plant promoters

mics-proteins

mole

A universal toolkit for rapid location and characterization of channels and pores in biomacromolecules

mon_lib

neemp

EEM parameterization software

overprot

OverProt creates an overview of secondary structure elements in protein families.

pdb-data-cruncher

PDB data cruncher collects data form PDB and transforms them for ValTrendsDB.

ppropt

PPROpt is a Python application for the fast protein structure optimization.

propagace-bioinformatika

Návrhy propagačních materiálů bioinformatiky

protein-similarity-parent-project

proteinsearch

Fron tend for the application that searches structurally similar protein chains.

rama_z_data

Rotamer data from rlabduke for use in SQC

rbp-tar

RBP-Tar is a web server for the retrieval of experimentally derived binding sites for hundreds of RNA Binding Proteins on the human genome.

reference_data

This repository contains reference data from the Richardson Lab at Duke.