sbfnk Goto Github PK

100days_group3

amr-index

AMR index - data and R scripts BMC Vet Res paper

applications-epiverse-pipelines

awesome-cv

Awesome CV is LaTeX template for your outstanding job application

batchgit

A shell script for maintaining git repositories system wide

bayesiantools

General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics

beamertheme

Beamer theme

brew

:beer::penguin: The Homebrew package manager for Linux

cmdstanr

CmdStanR: the R interface to CmdStan

command_stan

Contemporary statistical inference for infectious disease models using Stan

contact-patterns

Efficient estimation of age-specific social contact rates between men and women

covid19-forecast-hub-de

German and Polish COVID-19 Forecast Hub

covid19-forecast-hub-europe

European Covid-19 Forecast Hub. Under development.

covid19_uk_local_imm

d12frosted.io

Personal site

data_downloader

Download data from SFTP

datapapermo

analysis of toy_outbreak dataset from the measlesoutbreaker package

dev_guide

rOpenSci Packages: Development, Maintenance, and Peer Review

dotfiles

My personal configuration

dotfiles_old

@sbfnk does dotfiles

dynmod

Stuff for modelling infectious disease dynamics

ebola-cfr

Accompanying code for: Kucharski et al, Lancet, 2014

ebola.forecast.wa.sl

Code accompanying the manuscript "Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15"

ebola_forecasting_challenge

Code for the Ebola forecasting challenge

ebola_lofa

Code for analysing Ebola in Lofa County

ecdc-weekly-growth-forecasts

COVID-19 cases forecasts for the ECDC Forecast Hub

eid_ensemble_forecasting

code and data for "Trade-offs between individual and ensemble forecasts of an emerging infectious diseases"

epidemiology

CRAN Task View: Epidemiology

epiestim

A tool to estimate time varying instantaneous reproduction number during epidemics

epimixr

Epidemiological analysis using social mixing matrices