sblab-bioinformatics Goto Github PK

5fc-nucleosome

Computational methods for our manuscript in 5fC and nucleosomal organization

5fc-protocol

Computational methods for manuscript on 5fC-enrichment protocol

5hmuseq

Data analysis for sequencing 5-hydroxymethyluracil at single-base resolution (via chemical modification and mismatch formation)

bayesdiffmethyl

Differential methylation by Bayesian approach

bg4_commentary

bg4_cut_and_tag_sc

chem-map

cmpp

Computer code and data access for the CMPP manuscript

dario-test

Test repository

django-sblab

Code for django admin behind sblab database

dna-g4-methylation-dnmt1

Data access and computational analyses for DNA G-quadruplex structures mold the DNA methylome

dna-secondary-struct-chrom-lands

Published methods

dnmt3a-dnmt3b

Sequence preference of DNMT3A/B dictates genome-wide DNA methylation signature

epigenetics-of-glioblastoma

Computational methods for Base resolution maps reveal the importance of 5-hydroxymethylcytosine in a human glioblastoma

faq

Answers to frequently asked questions about datasets generated in the Balasubramanian group

g4-vs-tfs

g4_and_trancription

g4_in_stem_cells_diff

gwscreen_g4sensitivity

Computational methods genome-wide shRNA screen with G-quadruplex ligands sensitisation

illumina-450k-oxbs

Code accompanying the manuscript "Accurate measurement of 5-methylcytosine and 5-hydroxymethylcytosine in human cerebellum DNA by oxidative bisulfite on an array (OxBS-array)"

mapping-5hmu-in-leishmania

qg4-chip-seq-of-breast-cancer-pdtx

rebuilt-enhanced-methyl-seq

rna-g4-proteins

Computer code and data access for the manuscript

snap-seq

Computer code for the snAP-seq manuscript

workflows

Typical workflows for common tasks