Sina Booeshaghi's Projects
data mining the biorxiv
API for communicating with serial ports in the browser. Uses the experimental serial API https://wicg.github.io/serial/
upstream mirror
COVID-19 data from LA County
tool for manipulating equivalence class files
Pipeline to fetch metadata and raw FastQ files from public databases
A command line tool that makes it easier to find sequencing data from the SRA / GEO / ENA.
historical data on flu vaccine distribution
🧬 gget enables efficient querying of genomic reference databases to support the analysis of sequencing data.
A repository for CLIA labs that have a "Certification Type" of "Accreditation", "Compliance", or "Registration". Obtained from https://www.cdc.gov/clia/LabSearch.html
intervals
jeanpockets.com
Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts
Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
Reusable tools for working with next-generation sequencing (NGS) data
A radix tree in C#
datamining the parler datadump
playing around with pca and t-SNE projections
SBA Paycheck Protection Program Loan Level Data from https://home.treasury.gov/policy-issues/cares-act/assistance-for-small-businesses/sba-paycheck-protection-program-loan-level-data