Orphanet disease-phenotype associations not loading into Golr?

[scigraph]

Orphanet disease-phenotype associations not loading into Golr?

[ccondit]

@cmungall - yes. The query to load this Golr index is expecting that the subject has category 'disease' (either rdf:type or rdfs:subClassOf* of disease).

[cmungall]

How do we fix this? AFAICT it's a transitive subclass of disease on monarch.owl and SG

[ccondit]

Strange. I don't see that here:
http://rosie.crbs.ucsd.edu:9000/scigraph/graph/neighbors/Orphanet:881.json?relationshipType=subClassOf

and I don't see this individual in monarch.owl.

Is http://www.orpha.net/ORDO/Orphanet_881 the expected IRI?

[cmungall]

You're right. The issue here is that the Orphanet class is only linked into the mondo hierarchy through a non-logical dbxref. I will propose a separate solution.

[kshefchek]

Seems this works now https://monarchinitiative.org/disease/ORPHA:881 we likely just forgot to close