Comments (3)
@catanzaromj
The environment is Centos, python 3.10 with GCC 12.3.
But after a second view, this looks more like an internal issue/incompatibility with our build environment as I cannot successfully reproduce the issue elsewhere.
For instance, using our modules for numpy (v1.21.2) fails, but installing the numpy in a virtual env. works as expected.
# fails
module load python/3.10 cython/.3.0.10 oldest-supported-numpy/.2024a
pip wheel -v --no-deps --no-build-isolation https://files.pythonhosted.org/packages/c8/27/31ea7effa8a1cabd0f36962bb242eaa529577bec19157dfaaa983647caff/ripser-0.6.10.tar.gz
# works
module load python/3.10 cython/.3.0.10
virtualenv --no-download --clear ~/ENV && source ~/ENV/bin/activate
pip install oldest-supported-numpy
pip wheel --no-deps --no-build-isolation https://files.pythonhosted.org/packages/c8/27/31ea7effa8a1cabd0f36962bb242eaa529577bec19157dfaaa983647caff/ripser-0.6.10.tar.gz
What puzzle me is that using the source from GH works... I might circle back to this in September.
Sorry for the noise, I was a bit quick to open this issue as often the sdists on PyPI is incomplete or different from the release on GH (in general).
In the end, I used the source from GH so I was successful in building ripser.
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Hey @ccoulombe Sorry to hear that. Can you give some specifics on your environment, like OS and compiler?
It builds fine for me on Ubuntu 22.04 with g++ 11.4.0
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Thanks for the update @ccoulombe. When you circle back, feel free to re-open if you need some input from us.
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Related Issues (20)
- Dead comments in 0-dimensional computation/preferential treatment of edges with zero value
- get_greedy_perm (Samples) HOT 1
- Get the indices of the vectors forming a hole HOT 2
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- ld: cannot find /lib64/libpthread.so.0
- `ValueError: numpy.ndarray size changed` HOT 7
- Failed to build ripser, error: subprocess-exited-with-error HOT 6
- Knowing required RAM to run ripser
- Unsuccessful installation HOT 2
- Is there a way to get ripser to use virtual memory? HOT 2
- Failed building wheel for Ripser on Win11 HOT 3
- ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject HOT 1
- Failed building wheel for ripser HOT 1
- Failing to generate H1 result with small dataset. HOT 1
- A potential issue with the `lower_star_img` function with negative numbers HOT 9
- Missing wheels for 0.6.5 HOT 5
- Fix failing docs
- Compile ripser with numpy 2.x HOT 6
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