scipion-em's Projects
Repo to provide workflow templates for the rest of the repos in this organization
Action to release a pypi package with a comment when master branch receives an update.
Scipion documentation repository
Generic metadata viewer
Image-processing software for cryo-electron microscopy (tomo debugging version)
Base Scipion application that is based on pyworkflow and all extension plugins
Wrappers to Alexov lab programs, http://compbio.clemson.edu/lab/
Docker files to build docker images with scipion installed.
Base Scipion plugin defining objects and protocols for EM
Scipion plugin to integrate aitom tomography software
Plugin to use Appion's DoGpicker within the Scipion framework
Plugin to use AreTomo within the Scipion framework
Plugin to get atlas information from EPU....and in the future serialEM too.
utilities for handling PDB/mmcif atomic structure files
Plugin to use Atsas program within the Scipion framework
Plugin to use Bamfordlab programs within the Scipion framework
Bioinformatic tools
Plugin to use Blik program within the Scipion framework
Plugin to use Bsoft programs within the Scipion framework
Set of tools in ScipionTomo for electron tomography with bsoft
model building ccp4 programs
CCPEM wrappers in Scipion
Plugin to use Chimera programs within the Scipion framework
Plugin to use cisTEM programs within the Scipion framework
Plugin for continuous conformational flexibility analysis containing HEMNMA, StructMap, HEMNMA-3D, TomoFlow, NMMD, and DeepHEMNMA for in vitro and in situ cryo-EM/ET.
Scipion plugin for MicAssess and 2DAssess programs
Plugin to integrate cryoCARE: denoiser for tomography
Plugin to use cryoDRGN programs within the Scipion framework
Plugin to use cryoEF program within the Scipion framework