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pwem

pwem is a Python module of Scipion framework for image processing in Electron Microscopy

The entire collection is licensed under the terms of the GNU Public License, version 3 (GPLv3).

Development

To install pwem for development purposes, one can do:

# Create a clean virtual environment
conda create -n scipion python=3.8
conda activate
git clone https://github.com/scipion-em/scipion-em.git
cd scipion-em
pip install -e .

Running tests

conda activate scipion
cd scipion-em
export SCIPION_DOMAIN="pwem"
python -m unittest discover

API documentation

https://scipion-em.github.io/docs/release-3.0.0/api/pwem/pwem.html

scipion-em's Projects

.github icon .github

Repo to provide workflow templates for the rest of the repos in this organization

actionrelease icon actionrelease

Action to release a pypi package with a comment when master branch receives an update.

docs icon docs

Scipion documentation repository

relion icon relion

Image-processing software for cryo-electron microscopy (tomo debugging version)

scipion-app icon scipion-app

Base Scipion application that is based on pyworkflow and all extension plugins

scipion-em icon scipion-em

Base Scipion plugin defining objects and protocols for EM

scipion-em-atlas icon scipion-em-atlas

Plugin to get atlas information from EPU....and in the future serialEM too.

scipion-em-continuousflex icon scipion-em-continuousflex

Plugin for continuous conformational flexibility analysis containing HEMNMA, StructMap, HEMNMA-3D, TomoFlow, NMMD, and DeepHEMNMA for in vitro and in situ cryo-EM/ET.

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