Name: Steven Clipman
Type: User
Company: Johns Hopkins School of Medicine
Bio: Epidemiologist & Bioinformatician,
Assistant Professor at Johns Hopkins University School of Medicine
Location: Baltimore, MD, USA
Blog: https://sclipman.com
Steven Clipman's Projects
Bioinformatics pipeline for detecting anelloviruses present in samples using our metagenomic RCA ONT protocol
Pipeline components for real-time virus analysis
Python script for automatically prefixing .docx files with the author's last name
Simulation of a scale-free network using the Barabási-Albert model.
Coupled MCMC for Beast2
User-friendly distance-free method for defining clusters from phylogenetic trees
Switch to the sigmaexporter-plugin branch (https://github.com/oxfordinternetinstitute/gephi-plugins/tree/sigmaexporter-plugin/modules/sigmaExporter) or jsonexporter-plugin branch (https://github.com/oxfordinternetinstitute/gephi-plugins/tree/jsonexporter-plugin/modules/JsonExporter) for the relevant code.
HyPhy: Hypothesis testing using Phylogenies
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
Next-Generation Sequencing(NGS) toolkits.
Rapid, real-time monitoring of the SARS-CoV-2 pandemic and its impacts
Postal code geocoding and distance calculation
Inference of putative transmission phylogenetic clusters
This repository hosts code for an animated phylogeographic plot of HCV spread among PWID in India
Config files for my GitHub profile.
Sequences from HIV Easily Reconstructed
This repository hosts data and code for an interactive sociospatial network visualization of baseline HIV/HCV prevalence among a cohort of people who inject drugs in New Delhi, India. Visit the link below to view the interactive figure.
This repository hosts code for an interactive sociospatial network visualization of HIV incidence among a cohort of PWID in New Delhi, India
tools for working with genome variation graphs