Related Issues (20)
- Seaborn version requirement inconsistency
- Use correct reading functions for datasets HOT 1
- New plot function to draw the relations between 2 categorical adata.obs variables? HOT 1
- Linkage 'Z' contains negative distances.
- The read_10x_mtx() function does not work due to the update of the anndata package to 0.10.4 (January 14, 2024; Scanpy=1.9.6) HOT 4
- Dask support for pp.highly_variable_genes ("cellranger" flavor)
- Dask support for pp.highly_variable_genes ("seurat_v3" flavor(s))
- Test full dask support for `log1p`, `normalize_per_cell`, `filter_cells`/`filter_genes`
- Incorrect number setting ofr highly_variable_genes HOT 8
- error in sc.tl.rank_genes_groups HOT 6
- Something wrong with read_10x_mtx using anndata-0.10.4 HOT 1
- Seeming incompatibility with the numpy matrix subclass HOT 2
- read_10x_mtx() with annData 0.10.4 only reads one variable HOT 1
- Unify `method`/`flavor`/`backend`/… parameters
- Parameter docs render text in backticks as `<cite/>` text HOT 1
- Unable to plot embedding after Scanpy release 1.9.7 HOT 4
- pytest 8 compatibility HOT 2
- Fix plotting warnings raised in tutorial notebooks HOT 2
- Violin plots in Preprocessing and clustering 3k PBMCs tutorial HOT 4
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