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arangodb_biochem_importer

[WIP] Import biochemistry and genomics data into an ArangoDB graph

cpdl

Conserved Property Difference Locator

differentialexpressionutils

Module to upload/download/export differential expression object

expressionapi

To get ExpressionMatrix object from Expressionset object.

expressionutils

Functions for uploading and downloading KBase expression files.

featuresetutils

featurevalues

genome_transform

genomeutils

Programs and scripts of general use for nucleotide and protein sequence bioinformatics

genomeviewr

Tophat and Bowtie read alignment genome viewer for R

harvesters

Scripts to recursively collect, cull and process files of interest in ftp and web archives

hospitable

Trying to give Condor the convenience of using a shared file system

kb_ballgown

http://bioconductor.org/packages/release/bioc/html/ballgown.html

kb_cufflinks

Wrapper for cufflinks package

kb_cummerbund

kb_gtdbtk

GTDB-Tk App

kb_hisat2

Module for running the HISAT2 application (http://ccb.jhu.edu/software/hisat2/index.shtml)

kb_maxbin

kb_rxn_gene_finder

kb_star

This KBase module wraps the free open source software STAR: ultrafast universal RNA-seq aligner-STAR-2.5.3a

kb_uploadmethods

kbase_homology_big_matrix

Testing and prototyping for large similarity matrix for kbase homology service

kbasepaper

kbasernaseq

making-mudpies

Our purpose: to learn how to use Git

manyhellos

prototype "hello world" type program for kbase parallel job handling

mccorklenewreadutilstestpython

2nd try at a KBase module

mccorklereadutilstestperl

perl test of invoking ReadsUtils client within a module

mccorklereadutilstestpython

testing invocation of ReadUtils module service from within another module

metagenomeutils

Set of utility functions and Apps for working with metagenomics data in KBase