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abstract-datastructures-rs

Some traits defining data structures

bcalm

compacted de Bruijn graph construction in low memory

bifrost

Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs

bigraph-rs

Represent bigraphs in an abstract manner.

bioconda-recipes

Conda recipes for the bioconda channel.

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

cargo-release

Cargo subcommand "release": everything about releasing a rust crate.

codegen-course

compact-genome-rs

Bit-packed genome storage

drawio

Source to www.draw.io

fastx-statistics-rs

Rust tool to compute basic statistics of fasta or fastq files.

flowtigs

flye

De novo assembler for single molecule sequencing reads using repeat graphs

genome-graph-rs

Types as well as IO functions for genome graphs.

ggcat

Compacted and colored de Bruijn graph construction and querying

hi.sim

HiFi error modeler and simulator with ploidy

hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

homopolymer-compress-rs

Homopolymer compression of genomic data.

insilicoseq

:rocket: A sequencing simulator

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

minimap2-homopolymer-decompression

Homopolymer decompress minimap alignments

minimap2-paf-io

Read and write files in minimap2's PAF format.

minimizer-iterator-rs

An iterator over the minimizers of a sequence.

node-to-arc-centric-dbg

Convert a node-centric DBG into an arc-centric one

omnitigs-rs

Implementations of omnitig related algorithms.

prophasm

ProphAsm – a tool for computing simplitigs and k-mer sets manipulation

quast

A fork of the popular QUAST genome assembly evaluator to incorporate more advanced metrics

random-dna-generator-rs

Generate random DNA sequences for debugging bioinfo software

rust-mdbg

minimizer-space de Bruijn graphs (mdBG) for whole genome assembly

safe-paths-with-flowtigs