Error compiling BioMakie.jl using ProtoSyn

[kool7d]

Error compiling BioMakie.jl using ProtoSyn

[kool7d]

Commenting out the part in Calculators.jl including gb.jl fixes it.

if "USE_IGBR_NN" in keys(ENV) && ENV["USE_IGBR_NN"] === "false"
        @warn "Environment variable USE_IGBR_NN set to `false`. Not loading iGBR-NN ONNX models."
else
        # @info " | Loading GB"
        # include("gb.jl")
end

[JosePereiraUA]

The GB module has been problematic for quite a while. There's always some entropy in integrating with external tools. I'll try to fix it whenever I have the chance but I'm currently aways from a computer. Happy to know you found a temporary fix.

[kool7d]

Basically BioMakie only compiles with my CI if I use a registered version, but also only without including gb.jl. I have some ProtoSyn plotting working that I want to include.

[JosePereiraUA]

Will you be able to use it in this state?
Also, mind if I ask, would it be possible to see this material? Will the talk be available online afterwards or something?

[kool7d]

I just pushed some stuff to BioMakie which is basically the plotting support for ProtoSyn Poses. It's very basic, but it works for me and opens the door for now complicated stuff. If I make a new release it would have to compile so the ProtoSyn stuff would have to be removed and all put into a separate resource/example file so people can still potentially use it. It's a really great package with a lot of functionally so I thought it would be good to make some visualization for it so people can see their modifications and stuff in real time with Makie. It could also lower the learning curve and get more people using ProtoSyn. The talks will be made available on YouTube at some point.

…

On Mon, Jul 17, 2023, 2:08 AM José Pereira ***@***.***> wrote: Will you be able to use it in this state? Also, mind if I ask, would it be possible to see this material? Will the talk be available online afterwards or something? — Reply to this email directly, view it on GitHub <#55 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AGIL7DCP5W4EYOQ7WEEN3R3XQTQGBANCNFSM6AAAAAA2LTNMJQ> . You are receiving this because you authored the thread.Message ID: ***@***.***>

[kool7d]

Maybe I can put it in a file users can include? Then people can find a fork that works (the main one with GB or the one with it commented out?) and using ProtoSyn then include("protosyn.jl") with all the stuff in it. If I have something in the Examples folder that demonstrates using it, people could pick it up there.