Error in model evaluation

[Monica9577]

Error in model evaluation

[sronilsson]

Hi @Monica9577 ! SimBA takes all your files inside the project_folder/csv/targets_inserted directory and build a model from these files. In each one of these files, if you remove the body-part data columns (in the beginning) and your annotations (in the end of the file), you are left with 221 columns of features.

Next, you want to use this model .sav file, that is built using 221 columns of features, on new data inside your project_folder/csv/features_extracted directory.
SimBA goes ahead and opens the first file inside the project_folder/csv/features_extracted directory, and tries to analyze it. However, it finds 245 columns. It doesn’t know what to do, as the model was trained with 221 columns, and it now sees 245 columns - what should it do with all these extra columns? So it give you the error.

One possible way that could cause a mismatch in the number of columns is, for example, you added ROI features to your new data inside the project_folder/csv/features_extracted directory, but you did not add it to the files you used to train the model with - could this be possible?

[Monica9577]

No, I haven't add any ROIs to any of the files...
But I'm going to check if there's any difference between the features csv of the video I used to train the model and the one I'm using to evaluate it
Thanks!

[sronilsson]

Thanks!

One more potential reason for this error I have seen before: Within a single SimBA project, be sure you are working with the same Animal names and the same body-part names in all files.

The file project_folder/logs/measures/pose_configs/bp_names/project_bp_names.csv stores the names of your body-parts in your SimBA project. Before training models, SimBA drops the data for your body-parts - we don't want to use the locations of the body-parts in any model. However, if the body-parts names or animal names for any reason changes across data files, then the appropriate columns will not be recognized at body-parts and SimBA will fail to drop them in some files, causing the mismatch in the column numbers errors as you see.

[Monica9577]

Hi
Yes I'm using the same body parts and animal names in every video,
but is still giving problems

[sronilsson]

@Monica9577 - if you look at the a file inside the project_folder/csv/targets_inserted directory, and compare it against a file inside the project_folder/csv/features_extracted directory, what differences to you see in column names and the number of columns? You could also zip up and share a file from each directory here with me or through gdrive link and I can look?